Rh2BG095000

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000361
Physical Location & Seq
Reverse (-)
7483220 .. 7483669
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG095000.1

Sequence Viewer

Length: 450 bp
ATGACGATCTTCTTTTTCTTCTTCATATGTTCTCACATTCCCTCATCATCCTTTGCTGCTGTGCAAGACTTTTGTGTTGCAGACTACACAGCTCCTTCTGGACCCGCAGGCTACTCCTGCAAAAGGCCCGAAACTGTTACAGTGAATGATTTTGTATACTCGGGCCTAGGAGTTTCCGGTAACACCTCAAACCTTTTCAGAGTTGGAGATATCCCTGCATATGCTGATCAAGTCCCGGGTTTGAATGGCCTCAGCATTTCAATGGCTCGCGTAGACATAGCTCCCGGTGGTGTTGTCCCATTGCACATTCACCGCGGAGCTACAGAAGTGTTCCTTGTTGTACAAGGAACACTAGTTGCTGGGTTCATTTCCTCGGATCGGAACACAGTTTATATAACAAGAGTGGTGATATTATGGTTTTCCCTCAAGGGTTATTGCACTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

149

Amino Acids

15.99

Weight (kDa)

6.8

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 73 - 133 6.1e-15 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 156, 273
AccII CGCG 2 cut(s) 270, 315
AciI CCGC 3 cut(s) 105, 313, 315
AclWI GGATC 1 cut(s) 384
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 2 cut(s) 123, 378
AgsI TTSAA 2 cut(s) 244, 261
AhlI ACTAGT 1 cut(s) 352
AluBI AGCT 3 cut(s) 92, 281, 320
AluI AGCT 3 cut(s) 92, 281, 320
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 2 cut(s) 160, 235
AoxI GGCC 3 cut(s) 125, 163, 247
ApeKI GCWGC 1 cut(s) 56
AspA2I CCTAGG 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 101, 126, 163
AsuC2I CCSGG 3 cut(s) 236, 237, 285
AsuHPI GGTGA 2 cut(s) 302, 418
AvaI CYCGRG 2 cut(s) 160, 235
AvaII GGWCC 1 cut(s) 101
AvrII CCTAGG 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 43
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 3 cut(s) 236, 237, 285
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 2 cut(s) 167, 353
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 57
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 3 cut(s) 236, 237, 285
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 160, 235
BmgT120I GGNCC 3 cut(s) 101, 126, 163
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 3 cut(s) 236, 237, 285
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 3 cut(s) 236, 237, 285
BsaJI CCNNGG 4 cut(s) 166, 235, 313, 372
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 378
Bse3DI GCAATG 1 cut(s) 299
BseDI CCNNGG 4 cut(s) 166, 235, 313, 372
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 123, 378
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 270, 315
BshFI GGCC 3 cut(s) 127, 165, 249
BsiHKCI CYCGRG 2 cut(s) 160, 235
BsiSI CCGG 3 cut(s) 177, 236, 285
BslFI GGGAC 2 cut(s) 218, 281
BslI CCNNNNNNNGG 2 cut(s) 123, 378
BsmFI GGGAC 2 cut(s) 218, 281
BsnI GGCC 3 cut(s) 127, 165, 249
BsoBI CYCGRG 2 cut(s) 160, 235
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 6, 226, 376
BspACI CCGC 3 cut(s) 105, 313, 315
BspANI GGCC 3 cut(s) 127, 165, 249
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 2 cut(s) 270, 315
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 4 cut(s) 166, 235, 313, 372
BssMI GATC 3 cut(s) 6, 226, 376
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 157
Bst4CI ACNGT 3 cut(s) 136, 142, 388
BstAUI TGTACA 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 109, 268
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 2 cut(s) 270, 315
BstKTI GATC 3 cut(s) 9, 229, 379
BstMBI GATC 3 cut(s) 6, 226, 376
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSCI CCNGG 3 cut(s) 234, 235, 283
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 270, 315
BstV1I GCAGC 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 127, 165, 249
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 109, 268
Cfr13I GGNCC 3 cut(s) 101, 126, 163
Cfr42I CCGCGG 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 235
Csp6I GTAC 1 cut(s) 341
CviJI RGCY 8 cut(s) 92, 111, 127, 165, 249, 266, 281, 320
CviKI_1 RGCY 8 cut(s) 92, 111, 127, 165, 249, 266, 281, 320
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 8, 228, 378
DpnII GATC 3 cut(s) 6, 226, 376
Eco130I CCWWGG 1 cut(s) 166
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 160, 235
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 9 cut(s) 26, 28, 157, 220, 222, 278, 393, 395, 415
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 2 cut(s) 218, 281
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 2 cut(s) 26, 220
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 2 cut(s) 156, 273
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 167, 353
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 3 cut(s) 127, 165, 249
HapII CCGG 3 cut(s) 177, 236, 285
HpaII CCGG 3 cut(s) 177, 236, 285
HphI GGTGA 2 cut(s) 302, 418
Hpy166II GTNNAC 2 cut(s) 157, 274
Hpy188I TCNGA 3 cut(s) 200, 376, 381
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 157, 274
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 3 cut(s) 136, 142, 388
HpyCH4V TGCA 6 cut(s) 64, 80, 120, 218, 304, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 226
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 6, 226, 376
LmnI GCTCC 3 cut(s) 97, 286, 317
LpnPI CCDG 8 cut(s) 84, 93, 130, 190, 228, 249, 298, 345
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 2 cut(s) 167, 353
MaeIII GTNAC 2 cut(s) 136, 179
MalI GATC 3 cut(s) 8, 228, 378
MboI GATC 3 cut(s) 6, 226, 376
MboII GAAGA 2 cut(s) 10, 13
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 52, 196, 260, 382, 434
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 3 cut(s) 177, 236, 285
MspR9I CCNGG 3 cut(s) 236, 237, 285
MvnI CGCG 2 cut(s) 270, 315
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 3 cut(s) 236, 237, 285
NdeI CATATG 2 cut(s) 26, 220
NdeII GATC 3 cut(s) 6, 226, 376
NlaIV GGNNCC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 101, 126, 163
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 260
SacII CCGCGG 1 cut(s) 316
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 3 cut(s) 6, 226, 376
Sau96I GGNCC 3 cut(s) 101, 126, 163
ScrFI CCNGG 3 cut(s) 236, 237, 285
SetI ASST 5 cut(s) 94, 188, 195, 283, 322
SfcI CTRYAG 1 cut(s) 321
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 1 cut(s) 101
SmaI CCCGGG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SpeI ACTAGT 1 cut(s) 352
SsiI CCGC 3 cut(s) 105, 313, 315
SspMI CTAG 2 cut(s) 167, 353
StyD4I CCNGG 3 cut(s) 234, 235, 283
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 136, 142, 388
TatI WGTACW 1 cut(s) 340
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 13, 355
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 121
XmaI CCCGGG 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 166
XmiI GTMKAC 2 cut(s) 156, 273
XspI CTAG 2 cut(s) 167, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.