pycom15g19190

Auxin-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
13678226 .. 13678855
630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19190.1

Sequence Viewer

Length: 630 bp
ATGACTTTCCCTATCTTCTTCACATTTGCTCTCCTCCTCTCCTCCTCGTTTGCTTCTGTGCAAGACTTCTGCGTTGCAGACTACAAAGCTCCGGAGGGCCCTGCAGGCTACTCTTGTAAAAAGCCAGCAAAAGTTACGGTAGATGATTTCGTGTACTCAGGCCTTGGCATTGCCGGCAACACCACAAATATCATCAAAGCTGCAGTCACCCCTGCATTTGCTGCTCAATTTCCTGGTGTGAATGGCCTCGGCATTTCACTTGCACGCCTAGACCTGGATGCGGGTGGAGTTATCCCATTCCACACACACCCTGGGGCTTCTGAAGTCCTAGTTGTTGCGCAAGGAACAATAATTGCTGGGTTTGTTTCCTCAGCTAACACGGTTTATCTGAAAACTCTTAAGAAGGGTGACATTATGGTGTTCCCTCAAGGCCTATTGCACTTCCAAGTGAATGGAGATAAAGCTCCATCCCTTGCATACGTTAGCTTCAGTAGTCCAAGCCCCGGTCTGCAGATTCTGGACTTTGCACTGTTCCAAAACGACTTACCTACTGAATTGATAGCGCAGACCACTTTCCTCGATGTTGCTCAGATAAAGAAGCTTAAGGGTGTTCTTGGTGGTACTAATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

21.91

Weight (kDa)

6.25

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 198 6.9e-37 Cupin
Cupin_2 PF07883 91 - 156 5.4e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 342, 472
AfaI GTAC 2 cut(s) 155, 622
AfiI CCNNNNNNNGG 3 cut(s) 274, 280, 503
AflII CTTAAG 2 cut(s) 398, 602
AjnI CCWGG 3 cut(s) 232, 273, 310
AluBI AGCT 6 cut(s) 89, 200, 374, 464, 486, 601
AluI AGCT 6 cut(s) 89, 200, 374, 464, 486, 601
AlwNI CAGNNNCTG 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 4 cut(s) 97, 160, 244, 430
ApaI GGGCCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspLEI GCGC 2 cut(s) 340, 565
AspS9I GGNCC 2 cut(s) 97, 98
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 199, 419
BaeGI GKGCMC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 187, 208
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 3 cut(s) 234, 275, 312
BcnI CCSGG 1 cut(s) 504
BfaI CTAG 2 cut(s) 269, 329
BfmI CTRYAG 3 cut(s) 102, 201, 509
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 201, 222
BlsI GCNGC 2 cut(s) 202, 223
Bme1390I CCNGG 4 cut(s) 234, 275, 312, 504
BmgT120I GGNCC 2 cut(s) 97, 98
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 4 cut(s) 234, 275, 312, 504
BmsI GCATC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 504
BsaJI CCNNGG 5 cut(s) 163, 247, 310, 311, 502
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 280, 503
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 3 cut(s) 234, 275, 312
BseDI CCNNGG 5 cut(s) 163, 247, 310, 311, 502
BseGI GGATG 2 cut(s) 283, 467
BseLI CCNNNNNNNGG 3 cut(s) 274, 280, 503
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 171, 384, 602
BseRI GAGGAG 4 cut(s) 23, 26, 31, 34
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 2 cut(s) 187, 208
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 4 cut(s) 99, 162, 246, 432
BsiSI CCGG 3 cut(s) 92, 174, 504
BslI CCNNNNNNNGG 3 cut(s) 274, 280, 503
BsnI GGCC 4 cut(s) 99, 162, 246, 432
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 91
BspACI CCGC 1 cut(s) 281
BspANI GGCC 4 cut(s) 99, 162, 246, 432
BspCNI CTCAG 3 cut(s) 170, 383, 601
BspEI TCCGGA 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 3 cut(s) 106, 205, 513
BspTI CTTAAG 2 cut(s) 398, 602
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 5 cut(s) 163, 247, 310, 311, 502
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 234, 275, 312
Bst4CI ACNGT 3 cut(s) 139, 382, 531
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 106, 126, 175, 265
BstDEI CTNAG 3 cut(s) 157, 370, 588
BstF5I GGATG 2 cut(s) 283, 467
BstHHI GCGC 2 cut(s) 340, 565
BstMWI GCNNNNNNNGC 3 cut(s) 105, 174, 221
BstNI CCWGG 3 cut(s) 234, 275, 312
BstSCI CCNGG 4 cut(s) 232, 273, 310, 502
BstSFI CTRYAG 3 cut(s) 102, 201, 509
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 187, 208
BstXI CCANNNNNNTGG 1 cut(s) 452
BsuRI GGCC 4 cut(s) 99, 162, 246, 432
BtsCI GGATG 2 cut(s) 283, 467
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 4 cut(s) 106, 126, 175, 265
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 2 cut(s) 340, 565
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 97, 98
Csp6I GTAC 2 cut(s) 154, 621
CviQI GTAC 2 cut(s) 154, 621
DdeI CTNAG 3 cut(s) 157, 370, 588
Eco130I CCWWGG 1 cut(s) 163
Eco147I AGGCCT 2 cut(s) 162, 432
Eco24I GRGCYC 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 342, 472
EcoO109I RGGNCCY 2 cut(s) 97, 98
EcoRII CCWGG 3 cut(s) 232, 273, 310
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 163
FaiI YATR 2 cut(s) 416, 478
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 201, 222
FokI GGATG 2 cut(s) 290, 454
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 201, 222
FspBI CTAG 2 cut(s) 269, 329
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 339, 564
GluI GCNGC 2 cut(s) 201, 222
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 4 cut(s) 99, 162, 246, 432
HapII CCGG 3 cut(s) 92, 174, 504
HhaI GCGC 2 cut(s) 340, 565
Hin6I GCGC 2 cut(s) 338, 563
HinP1I GCGC 2 cut(s) 338, 563
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 1 cut(s) 514
HpaII CCGG 3 cut(s) 92, 174, 504
HphI GGTGA 2 cut(s) 199, 419
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 322, 390, 591
Hpy188III TCNNGA 2 cut(s) 92, 518
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 139, 382, 531
HpyCH4IV ACGT 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 174, 221
HpyF3I CTNAG 3 cut(s) 157, 370, 588
HpySE526I ACGT 1 cut(s) 480
HspAI GCGC 2 cut(s) 338, 563
Kpn2I TCCGGA 1 cut(s) 91
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 94, 469
Lsp1109I GCAGC 2 cut(s) 187, 208
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 269, 329
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 133, 205, 407
MboII GAAGA 2 cut(s) 7, 10
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 4 cut(s) 227, 351, 554, 625
MnlI CCTC 9 cut(s) 44, 47, 52, 55, 88, 257, 379, 435, 587
MroI TCCGGA 1 cut(s) 91
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 2 cut(s) 399, 603
MslI CAYNNNNRTG 1 cut(s) 416
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 3 cut(s) 92, 174, 504
MspR9I CCNGG 4 cut(s) 234, 275, 312, 504
MvaI CCWGG 3 cut(s) 234, 275, 312
MwoI GCNNNNNNNGC 3 cut(s) 105, 174, 221
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 504
NgoMIV GCCGGC 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 99
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 205, 407
NsbI TGCGCA 1 cut(s) 339
PasI CCCWGGG 1 cut(s) 311
PceI AGGCCT 2 cut(s) 162, 432
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 202, 223
Psp6I CCWGG 3 cut(s) 232, 273, 310
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 3 cut(s) 232, 273, 310
PspN4I GGNNCC 1 cut(s) 99
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 97, 98
PstI CTGCAG 3 cut(s) 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 155, 622
RsaNI GTAC 2 cut(s) 154, 621
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 399, 603
SatI GCNGC 2 cut(s) 201, 222
Sau96I GGNCC 2 cut(s) 97, 98
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 4 cut(s) 234, 275, 312, 504
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 101
SetI ASST 9 cut(s) 91, 202, 276, 376, 466, 483, 488, 550, 603
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 3 cut(s) 102, 201, 509
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 4 cut(s) 227, 351, 554, 625
SseBI AGGCCT 2 cut(s) 162, 432
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 269, 329
StuI AGGCCT 2 cut(s) 162, 432
StyD4I CCNGG 4 cut(s) 232, 273, 310, 502
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 139, 382, 531
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 579
TasI AATT 4 cut(s) 227, 351, 554, 625
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 2 cut(s) 399, 603
Tru9I TTAA 2 cut(s) 399, 603
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 2 cut(s) 205, 407
TseI GCWGC 2 cut(s) 200, 221
Tsp45I GTSAC 2 cut(s) 205, 407
TspRI CASTG 1 cut(s) 534
Vha464I CTTAAG 2 cut(s) 398, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XspI CTAG 2 cut(s) 269, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.