RchiOBHm_Chr2g0094791

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000361
Physical Location & Seq
Reverse (-)
7683366 .. 7684227
862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46979

Sequence Viewer

Length: 636 bp
ATGGCGGTTTTCTTTATCTTGATGTTTTCTCTCATTCTCTCCTCCTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACAGAGCTCCTTCTGGACCTGCAGGCTACTCCTGCAGAAGGCCTGAAACTGTTACAGTGAATGATTTTGTATACTCCGGCCTAGGCGTTGCCGGTAACACCTCAAACATTTTCAGAGCTGCAAACACCCCTGCGTCCGCGGCTGAGTTTCCTGGTGTGAATGGCCTTGGCATTTCAATGTCTCGTGTAGACTTGGCTGCCGGTGGTGTTGTCCCTTTGCATATACACCCCGGAGCGAATGAAGTCTTACTTGTTGCGCAAGGAACACTAGTTGCCGGGTTCATATCCTCGGATCGCAACACAGTTTATCTGAAAACTATTAACAGTGGTGATATTATGGTTTTCCCTCAAGGGTTATTGCACTTCCAAGTGAATGTTGGAAATGCTACGCCAGTCCTTGCATTTGCTAGCTACAGCAGTCCAAGGCCAGGTCTGCAGATTGTGGACTATGCACTATTTCAAAGCAACTTTCCTACTCAGTTGATAGCTAGAACTACTTTCCTTGGCATTCCTGAAATAAGTAGACTTAAGGCTGTCTTTGGTAGCACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

211

Amino Acids

22.29

Weight (kDa)

6.81

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 197 4.5e-32 Cupin
Cupin_2 PF07883 89 - 160 7.4e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 3 cut(s) 153, 270, 604
AccII CGCG 1 cut(s) 221
AciI CCGC 3 cut(s) 5, 219, 221
AclWI GGATC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 120, 509
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 2 cut(s) 258, 542
AhlI ACTAGT 1 cut(s) 349
AjnI CCWGG 2 cut(s) 232, 508
AluBI AGCT 4 cut(s) 89, 200, 492, 569
AluI AGCT 4 cut(s) 89, 200, 492, 569
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 381
AoxI GGCC 4 cut(s) 122, 160, 244, 506
ApeKI GCWGC 3 cut(s) 53, 200, 278
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 312, 358
AsuHPI GGTGA 1 cut(s) 422
AsuNHI GCTAGC 1 cut(s) 488
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 163
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 40, 187, 265
BciT130I CCWGG 2 cut(s) 234, 510
BcnI CCSGG 2 cut(s) 312, 358
BcoDI GTCTC 1 cut(s) 267
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 4 cut(s) 164, 350, 489, 570
BfmI CTRYAG 5 cut(s) 82, 102, 115, 493, 515
BfrI CTTAAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 54, 201, 222, 279
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 4 cut(s) 55, 202, 223, 280
Bme1390I CCNGG 4 cut(s) 234, 312, 358, 510
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 4 cut(s) 234, 312, 358, 510
BmtI GCTAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 312, 358
BsaJI CCNNGG 7 cut(s) 163, 219, 247, 310, 369, 503, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 509
Bse118I RCCGGY 2 cut(s) 173, 281
Bse1I ACTGG 1 cut(s) 473
BseBI CCWGG 2 cut(s) 234, 510
BseDI CCNNGG 7 cut(s) 163, 219, 247, 310, 369, 503, 583
BseLI CCNNNNNNNGG 2 cut(s) 120, 509
BseMII CTCAG 2 cut(s) 216, 572
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 3 cut(s) 40, 187, 265
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 124, 162, 246, 508
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 5 cut(s) 159, 174, 282, 312, 357
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 120, 509
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 4 cut(s) 124, 162, 246, 508
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 3 cut(s) 5, 219, 221
BspANI GGCC 4 cut(s) 124, 162, 246, 508
BspCNI CTCAG 2 cut(s) 217, 571
BspFNI CGCG 1 cut(s) 221
BspMAI CTGCAG 3 cut(s) 106, 119, 519
BspMI ACCTGC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 608
BsrFI RCCGGY 2 cut(s) 173, 281
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 2 cut(s) 173, 281
BssECI CCNNGG 7 cut(s) 163, 219, 247, 310, 369, 503, 583
BssMI GATC 1 cut(s) 373
BssNAI GTATAC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 4 cut(s) 163, 247, 503, 583
Bst1107I GTATAC 1 cut(s) 154
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 234, 510
Bst4CI ACNGT 4 cut(s) 133, 139, 385, 407
BstAFI CTTAAG 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 106, 490
BstDEI CTNAG 2 cut(s) 225, 558
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 114, 221, 514
BstNI CCWGG 2 cut(s) 234, 510
BstSCI CCNGG 4 cut(s) 232, 310, 356, 508
BstSFI CTRYAG 5 cut(s) 82, 102, 115, 493, 515
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 40, 187, 265
BstZ17I GTATAC 1 cut(s) 154
BsuRI GGCC 4 cut(s) 124, 162, 246, 508
BtgI CCRYGG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 144, 412
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 106, 490
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 2 cut(s) 173, 281
Cfr13I GGNCC 1 cut(s) 98
Cfr42I CCGCGG 1 cut(s) 222
CseI GACGC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 225, 558
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 4 cut(s) 163, 247, 503, 583
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 232, 508
EcoT14I CCWWGG 4 cut(s) 163, 247, 503, 583
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 4 cut(s) 163, 247, 503, 583
FaiI YATR 7 cut(s) 51, 154, 303, 305, 365, 419, 531
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 602, 634
FaqI GGGAC 1 cut(s) 278
FblI GTMKAC 3 cut(s) 153, 270, 604
Fnu4HI GCNGC 4 cut(s) 54, 201, 222, 279
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 54, 201, 222, 279
FspBI CTAG 4 cut(s) 164, 350, 489, 570
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 54, 201, 222, 279
HaeIII GGCC 4 cut(s) 124, 162, 246, 508
HapII CCGG 5 cut(s) 159, 174, 282, 312, 357
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HpaII CCGG 5 cut(s) 159, 174, 282, 312, 357
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 154, 271, 526, 605
Hpy188I TCNGA 3 cut(s) 197, 373, 393
Hpy188III TCNNGA 3 cut(s) 19, 96, 593
Hpy8I GTNNAC 4 cut(s) 154, 271, 526, 605
HpyAV CCTTC 2 cut(s) 102, 114
HpyCH4III ACNGT 4 cut(s) 133, 139, 385, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 221, 514
HpyF3I CTNAG 2 cut(s) 225, 558
HspAI GCGC 1 cut(s) 338
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 94, 314
Lsp1109I GCAGC 3 cut(s) 40, 187, 265
MaeI CTAG 4 cut(s) 164, 350, 489, 570
MaeIII GTNAC 2 cut(s) 133, 176
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 631
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 5 cut(s) 52, 55, 193, 379, 438
MseI TTAA 3 cut(s) 402, 609, 634
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 5 cut(s) 159, 174, 282, 312, 357
MspR9I CCNGG 4 cut(s) 234, 312, 358, 510
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 2 cut(s) 234, 510
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 114, 221, 514
NciI CCSGG 2 cut(s) 312, 358
NdeII GATC 1 cut(s) 373
NheI GCTAGC 1 cut(s) 488
NsbI TGCGCA 1 cut(s) 339
PceI AGGCCT 1 cut(s) 124
PctI GAATGC 1 cut(s) 588
PkrI GCNGC 4 cut(s) 55, 202, 223, 280
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 232, 508
PspGI CCWGG 2 cut(s) 232, 508
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 3 cut(s) 106, 119, 519
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 91
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 3 cut(s) 402, 609, 634
SatI GCNGC 4 cut(s) 54, 201, 222, 279
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 4 cut(s) 234, 312, 358, 510
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 91
SetI ASST 7 cut(s) 91, 103, 185, 202, 494, 514, 571
SfcI CTRYAG 5 cut(s) 82, 102, 115, 493, 515
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 429, 608
SmoI CTYRAG 2 cut(s) 429, 608
SpeI ACTAGT 1 cut(s) 349
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 1 cut(s) 631
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 5, 219, 221
SspMI CTAG 4 cut(s) 164, 350, 489, 570
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 4 cut(s) 232, 310, 356, 508
StyI CCWWGG 4 cut(s) 163, 247, 503, 583
TaaI ACNGT 4 cut(s) 133, 139, 385, 407
TasI AATT 1 cut(s) 631
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 402, 609, 634
Tru9I TTAA 3 cut(s) 402, 609, 634
TscAI CASTG 2 cut(s) 144, 412
TseI GCWGC 3 cut(s) 53, 200, 278
TspDTI ATGAA 2 cut(s) 336, 352
TspRI CASTG 2 cut(s) 144, 412
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 3 cut(s) 153, 270, 604
XspI CTAG 4 cut(s) 164, 350, 489, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.