FvH4_1g18170

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000361
Physical Location & Seq
Forward (+)
10574446 .. 10575986
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18170.t1

Sequence Viewer

Length: 639 bp
ATGATGATTTCCCCTATCTGCTTCTTCATATTCTCTCTCGTTCTCTCCTCCTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACACAGCTCCACAAGGCCCTGCAGGGTACTCATGCAAAGACCCCGCAAAGGTTACGGTAGATGATTTCGTCTACTCTGGCCTAAGAGTTTCTGGCAACACCTCCAATATTCACAAGTTTGGATTCGTACCTGCTGTAGTTACTCAGTTTCCTGGTCTCAATGGCCTCGGCGTTTCGGTGGCGCGCACCGACTTGGGTGTGGGTGGAGTTATCCCATTCCACACTCACCGTGGAGCTACAGAAGTGCTAATTGTCGCGGAAGGAAGCTCGGTAATTGGAGGGTTCGTTGACTCGAATAACAAAGTTTACATGAAAACTATGAGCAAGGGTGATTGTATGGTTTTCCCTAGAGGTTTGTTGCACTTTGCAGTGAATCAAGGCGATACTCCGGCCCTTATGTATGCTAGCTTAAGCAGTGAAAACCCAGGTCTGGATGTTTTGGAAACTCAACTGTTTAAAAACGATTTACCTACTGACCTGATACATAAGACTACTTTACTAGACAAATCTCAGATCAGGAAACTAAAGCGTCTTCTTGGTGGTACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

213

Amino Acids

22.7

Weight (kDa)

6.95

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 58 - 201 1.1e-30 Cupin
Cupin_2 PF07883 93 - 163 1e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 159
AccII CGCG 2 cut(s) 271, 344
AciI CCGC 2 cut(s) 132, 344
AfaI GTAC 3 cut(s) 116, 216, 631
AfiI CCNNNNNNNGG 2 cut(s) 136, 517
AflII CTTAAG 1 cut(s) 496
AjnI CCWGG 2 cut(s) 238, 511
AluBI AGCT 4 cut(s) 95, 323, 354, 495
AluI AGCT 4 cut(s) 95, 323, 354, 495
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 4 cut(s) 103, 166, 250, 477
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 2 cut(s) 271, 273
AspS9I GGNCC 2 cut(s) 104, 478
AsuHPI GGTGA 2 cut(s) 305, 428
AsuNHI GCTAGC 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 240, 513
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 3 cut(s) 435, 492, 587
BfmI CTRYAG 3 cut(s) 108, 222, 324
BfrI CTTAAG 1 cut(s) 496
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 240, 513
BmgT120I GGNCC 2 cut(s) 104, 478
BmrFI CCNGG 2 cut(s) 240, 513
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 253, 316, 511
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 517
BseBI CCWGG 2 cut(s) 240, 513
BseDI CCNNGG 3 cut(s) 253, 316, 511
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 136, 517
BseMII CTCAG 2 cut(s) 245, 611
BsePI GCGCGC 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 37, 40
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 271, 344
BshFI GGCC 4 cut(s) 105, 168, 252, 479
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 2 cut(s) 136, 517
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 4 cut(s) 105, 168, 252, 479
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 600
BspACI CCGC 2 cut(s) 132, 344
BspANI GGCC 4 cut(s) 105, 168, 252, 479
BspCNI CTCAG 2 cut(s) 244, 610
BspFNI CGCG 2 cut(s) 271, 344
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 495
BspTI CTTAAG 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 253, 316, 511
BssHII GCGCGC 1 cut(s) 269
BssMI GATC 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 240, 513
Bst4CI ACNGT 3 cut(s) 145, 317, 540
BstAFI CTTAAG 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 271, 493
BstDEI CTNAG 3 cut(s) 170, 231, 597
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 526
BstFNI CGCG 2 cut(s) 271, 344
BstHHI GCGC 2 cut(s) 271, 273
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 600
BstNI CCWGG 2 cut(s) 240, 513
BstSCI CCNGG 2 cut(s) 238, 511
BstSFI CTRYAG 3 cut(s) 108, 222, 324
BstUI CGCG 2 cut(s) 271, 344
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 4 cut(s) 105, 168, 252, 479
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 2 cut(s) 462, 508
BtsIMutI CAGTG 2 cut(s) 462, 508
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 271, 493
CfoI GCGC 2 cut(s) 271, 273
Cfr13I GGNCC 2 cut(s) 104, 478
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 115, 215, 630
CviAII CATG 2 cut(s) 120, 397
CviJI RGCY 8 cut(s) 95, 105, 168, 252, 323, 354, 479, 495
CviKI_1 RGCY 8 cut(s) 95, 105, 168, 252, 323, 354, 479, 495
CviQI GTAC 3 cut(s) 115, 215, 630
DdeI CTNAG 3 cut(s) 170, 231, 597
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
DraI TTTAAA 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 238, 511
FaeI CATG 2 cut(s) 123, 400
FaiI YATR 9 cut(s) 29, 57, 121, 398, 407, 425, 485, 489, 573
FatI CATG 2 cut(s) 119, 396
FauI CCCGC 1 cut(s) 139
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 435, 492, 587
GlaI GCGC 2 cut(s) 270, 272
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 4 cut(s) 105, 168, 252, 479
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 605
HhaI GCGC 2 cut(s) 271, 273
Hin1II CATG 2 cut(s) 123, 400
Hin6I GCGC 2 cut(s) 269, 271
HinP1I GCGC 2 cut(s) 269, 271
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 3 cut(s) 210, 377, 460
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 305, 428
Hpy166II GTNNAC 3 cut(s) 160, 376, 394
Hpy188I TCNGA 1 cut(s) 600
Hpy188III TCNNGA 2 cut(s) 518, 604
Hpy8I GTNNAC 3 cut(s) 160, 376, 394
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 145, 317, 540
HpyCH4V TGCA 6 cut(s) 67, 83, 110, 123, 448, 455
HpyF3I CTNAG 3 cut(s) 170, 231, 597
Hsp92II CATG 2 cut(s) 123, 400
HspAI GCGC 2 cut(s) 269, 271
Kzo9I GATC 1 cut(s) 600
LmnI GCTCC 2 cut(s) 100, 320
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 3 cut(s) 435, 492, 587
MaeIII GTNAC 2 cut(s) 139, 226
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 2 cut(s) 16, 611
MluCI AATT 2 cut(s) 336, 360
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 6 cut(s) 58, 61, 199, 263, 359, 431
MseI TTAA 2 cut(s) 497, 543
MspCI CTTAAG 1 cut(s) 496
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 240, 513
MvaI CCWGG 2 cut(s) 240, 513
MvnI CGCG 2 cut(s) 271, 344
NdeII GATC 1 cut(s) 600
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 2 cut(s) 123, 400
NmeAIII GCCGAG 1 cut(s) 234
PauI GCGCGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 210, 460
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 238, 511
PspGI CCWGG 2 cut(s) 238, 511
PspPI GGNCC 2 cut(s) 104, 478
PstI CTGCAG 1 cut(s) 112
PteI GCGCGC 1 cut(s) 269
RsaI GTAC 3 cut(s) 116, 216, 631
RsaNI GTAC 3 cut(s) 115, 215, 630
SaqAI TTAA 2 cut(s) 497, 543
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 2 cut(s) 104, 478
SbfI CCTGCAGG 1 cut(s) 112
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 240, 513
SdaI CCTGCAGG 1 cut(s) 112
SfcI CTRYAG 3 cut(s) 108, 222, 324
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse8387I CCTGCAGG 1 cut(s) 112
Sse9I AATT 2 cut(s) 336, 360
SsiI CCGC 2 cut(s) 132, 344
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 435, 492, 587
StyD4I CCNGG 2 cut(s) 238, 511
TaaI ACNGT 3 cut(s) 145, 317, 540
TaqI TCGA 1 cut(s) 380
TasI AATT 2 cut(s) 336, 360
TfiI GAWTC 2 cut(s) 210, 460
Tru1I TTAA 2 cut(s) 497, 543
Tru9I TTAA 2 cut(s) 497, 543
TscAI CASTG 2 cut(s) 462, 508
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 16, 413
TspRI CASTG 2 cut(s) 462, 508
Vha464I CTTAAG 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 435, 492, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.