Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Forward (+)

8402205 .. 8403486

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAATTTTCTTGATTTACCAGAGGAATGCATCGCCACCATGATTTCTTTCACCAGCCCCTTCGACGCATGCCGTATCTCTGCTGTCTCTAAATTGCTTCGCTCCGCGGCGGATTCCAATACCACTTGGGAGAGATTTCTTCCATCAGATTATCGTATGTATATCGATAATTCTTTATCTAGATTTTCCAACAAGCAGCTCTTCCTACGTTTTTGTGAATCCCCTCTTCTCATCGAGGATGGAAGAACGAGCTTTTGGATGGAAAAGAGAAGCGGGAAGAAATGTTGGATGTTATCTGCAAGGAAACTAGATATTGTTTGGGTTGATAGTCCTGAATTCTGGATATGGGTTTCGATTCCGGACTCGAGATTTGAGGAAGTTGCAGGGCTTCTAATGGTATGTTGGTTTGAAATCCGAGGAACACAAGAGTCTAGAGAAGATGGGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTTTGATGATGAGGAGATCGAAATGAGCGTATTGGAGACTAGAGAAGGCGGTTGGAAAGGCGGAATCATCGTTCAAGGGATCGAGATTAGGCCAAAAGAATTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

195

Amino Acids

22.78

Weight (kDa)

4.59

Isoelectric Point (pI)

69.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	93 - 142	4.8e-18	Phloem protein 2
PP2	PF14299	143 - 191	2.3e-15	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	6 cut(s)	105, 107, 110, 273, 528, 540
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	2 cut(s)	4, 335
AgsI	TTSAA	3 cut(s)	410, 458, 554
AjuI	GAANNNNNNNTTGG	4 cut(s)	238, 270, 459, 491
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	2 cut(s)	199, 252
AluI	AGCT	2 cut(s)	199, 252
Alw26I	GTCTC	2 cut(s)	91, 509
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	4, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AsuHPI	GGTGA	2 cut(s)	43, 476
AvaI	CYCGRG	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	4 cut(s)	151, 233, 253, 434
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	91, 509
BfaI	CTAG	4 cut(s)	180, 308, 432, 519
BisI	GCNGC	2 cut(s)	108, 197
BlsI	GCNGC	2 cut(s)	109, 198
BmeT110I	CYCGRG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	105, 415
BsaWI	WCCGGW	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	105, 415
BseGI	GGATG	3 cut(s)	244, 264, 294
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	571
BshVI	ATCGAT	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	91, 509
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	364
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	495, 558
BspACI	CCGC	6 cut(s)	105, 107, 110, 273, 528, 540
BspANI	GGCC	1 cut(s)	571
BspDI	ATCGAT	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	107
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	105, 415
BssMI	GATC	2 cut(s)	495, 558
Bst6I	CTCTTC	2 cut(s)	206, 231
BstC8I	GCNNGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	244, 264, 294
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	2 cut(s)	498, 561
BstMAI	GTCTC	2 cut(s)	91, 509
BstMBI	GATC	2 cut(s)	495, 558
BstNSI	RCATGY	1 cut(s)	72
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	571
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	244, 264, 294
Cac8I	GCNNGC	1 cut(s)	70
Cfr42I	CCGCGG	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	74
CviAII	CATG	2 cut(s)	40, 69
CviJI	RGCY	5 cut(s)	57, 199, 252, 388, 571
CviKI_1	RGCY	5 cut(s)	57, 199, 252, 388, 571
DpnI	GATC	2 cut(s)	497, 560
DpnII	GATC	2 cut(s)	495, 558
Eam1104I	CTCTTC	2 cut(s)	206, 231
EarI	CTCTTC	2 cut(s)	206, 231
EciI	GGCGGA	2 cut(s)	125, 555
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	2 cut(s)	43, 72
FaiI	YATR	7 cut(s)	41, 70, 158, 162, 346, 400, 474
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	2 cut(s)	39, 68
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	108, 197
FokI	GGATG	3 cut(s)	251, 271, 301
Fsp4HI	GCNGC	2 cut(s)	108, 197
FspBI	CTAG	4 cut(s)	180, 308, 432, 519
GluI	GCNGC	2 cut(s)	108, 197
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	43, 72
HinfI	GANTC	6 cut(s)	113, 218, 355, 362, 428, 543
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	43, 476
Hpy188I	TCNGA	2 cut(s)	148, 416
Hpy188III	TCNNGA	8 cut(s)	11, 180, 332, 340, 359, 366, 432, 562
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	70, 518
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	30, 299, 383
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	43, 72
Kpn2I	TCCGGA	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	495, 558
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	33, 67, 325, 345, 369, 372
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	4 cut(s)	180, 308, 432, 519
MaeII	ACGT	1 cut(s)	208
MalI	GATC	2 cut(s)	497, 560
MboI	GATC	2 cut(s)	495, 558
MboII	GAAGA	6 cut(s)	131, 193, 218, 255, 289, 449
MluCI	AATT	5 cut(s)	4, 92, 169, 335, 578
MlyI	GAGTC	2 cut(s)	356, 437
MmeI	TCCRAC	4 cut(s)	213, 266, 429, 512
MnlI	CCTC	6 cut(s)	16, 229, 234, 367, 410, 484
Mph1103I	ATGCAT	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	32
MvnI	CGCG	1 cut(s)	107
NdeII	GATC	2 cut(s)	495, 558
NlaIII	CATG	2 cut(s)	43, 72
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	72
PaeR7I	CTCGAG	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	113, 218, 355, 543
PkrI	GCNGC	2 cut(s)	109, 198
PleI	GAGTC	2 cut(s)	356, 436
PpsI	GAGTC	2 cut(s)	356, 436
SacII	CCGCGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	206
SatI	GCNGC	2 cut(s)	108, 197
Sau3AI	GATC	2 cut(s)	495, 558
SchI	GAGTC	2 cut(s)	356, 437
SetI	ASST	3 cut(s)	201, 211, 254
SfaNI	GCATC	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	364
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SphI	GCATGC	1 cut(s)	72
Sse9I	AATT	5 cut(s)	4, 92, 169, 335, 578
SsiI	CCGC	6 cut(s)	105, 107, 110, 273, 528, 540
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	4 cut(s)	180, 308, 432, 519
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	7 cut(s)	63, 165, 234, 353, 365, 498, 561
TasI	AATT	5 cut(s)	4, 92, 169, 335, 578
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	113, 218, 355, 543
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	4, 335
XbaI	TCTAGA	2 cut(s)	179, 431
XceI	RCATGY	1 cut(s)	72
XhoI	CTCGAG	1 cut(s)	364
XspI	CTAG	4 cut(s)	180, 308, 432, 519
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.