Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308613.1

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

230 .. 887

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgataggagcaagagggctttcaattgcaggggaagaagacaaactcggttattggcaatggacaaccgtaccagcatctaggttttgtgaagtcgctgagctgaaaaatgtattggggcttgacatcaaggcacacatcaaaactagaatgttgtctccgggtacaacctatgcggcttactttgtctatcagctcttaggatgcagatttgggtttgcacaaacgccaattgagtttcgcgtcacttgggaacaaagccgagtagaagcgtcttaccatggggtatgcctagaacgtgtggttctagacccatccgcagcgtctccacgagctcaatatagaagagatgggtggatggaggtggagatgggtgagttcttcgtcaaagaaggagataatactactgtggagtgtagtgtgagggaagttaatggcactaagagcggcctccttgtggaaggcattgagattaggcctaaacttgatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

164

Amino Acids

18.46

Weight (kDa)

5.5

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	447
AccII	CGCG	1 cut(s)	243
AciI	CCGC	3 cut(s)	176, 318, 447
AfaI	GTAC	2 cut(s)	72, 166
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	3 cut(s)	103, 196, 335
AluI	AGCT	3 cut(s)	103, 196, 335
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	162, 330
AoxI	GGCC	2 cut(s)	448, 476
ApeKI	GCWGC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	4 cut(s)	322, 344, 352, 364
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	162, 330
BfaI	CTAG	4 cut(s)	81, 147, 293, 308
BisI	GCNGC	3 cut(s)	177, 321, 448
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	3 cut(s)	178, 322, 449
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	86, 194
BpiI	GAAGAC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	209, 314, 363
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	450, 478
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	162, 330
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	450, 478
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	3 cut(s)	176, 318, 447
BspANI	GGCC	2 cut(s)	450, 478
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	70, 409
Bst6I	CTCTTC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	99, 199, 441
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	209, 314, 363
BstFNI	CGCG	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	162, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	450, 478
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	209, 314, 363
CseI	GACGC	3 cut(s)	232, 261, 312
Csp6I	GTAC	2 cut(s)	71, 165
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	9 cut(s)	19, 103, 121, 179, 196, 261, 335, 450, 478
CviKI_1	RGCY	9 cut(s)	19, 103, 121, 179, 196, 261, 335, 450, 478
CviQI	GTAC	2 cut(s)	71, 165
DdeI	CTNAG	3 cut(s)	99, 199, 441
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	174, 282, 289, 342, 491
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	177, 321, 448
FokI	GGATG	3 cut(s)	216, 301, 370
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	177, 321, 448
FspBI	CTAG	4 cut(s)	81, 147, 293, 308
GluI	GCNGC	3 cut(s)	177, 321, 448
HaeIII	GGCC	2 cut(s)	450, 478
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	3 cut(s)	232, 261, 312
Hin1II	CATG	1 cut(s)	284
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	386
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	386, 455
HpyCH4III	ACNGT	2 cut(s)	70, 409
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	29, 207, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	3 cut(s)	99, 199, 441
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	3 cut(s)	15, 87, 174
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	86, 194
MaeI	CTAG	4 cut(s)	81, 147, 293, 308
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	244
MbiI	CCGCTC	1 cut(s)	447
MboII	GAAGA	4 cut(s)	47, 50, 357, 373
MfeI	CAATTG	2 cut(s)	24, 231
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	24, 231
MnlI	CCTC	4 cut(s)	8, 355, 417, 461
MseI	TTAA	1 cut(s)	432
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	2 cut(s)	24, 231
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	280
NlaIII	CATG	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	478
PkrI	GCNGC	3 cut(s)	178, 322, 449
Psp124BI	GAGCTC	1 cut(s)	337
RsaI	GTAC	2 cut(s)	72, 166
RsaNI	GTAC	2 cut(s)	71, 165
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	177, 321, 448
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	86, 105, 173, 198, 301, 337, 366
SfaNI	GCATC	2 cut(s)	86, 194
Sse9I	AATT	2 cut(s)	24, 231
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	176, 318, 447
SspMI	CTAG	4 cut(s)	81, 147, 293, 308
SstI	GAGCTC	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	70, 409
TaiI	ACGT	1 cut(s)	301
TasI	AATT	2 cut(s)	24, 231
TauI	GCSGC	2 cut(s)	179, 450
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	244
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	4 cut(s)	81, 147, 293, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.