Rmu_sc0001259.1_g000014

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001259.1
OG0000849
Physical Location & Seq
Forward (+)
96251 .. 97224
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001259.1_g000014.1.cds

Sequence Viewer

Length: 480 bp
atgaagaacatgatcagcatgctgcctgtggagtgcatctcccacatcatttcccatacatcccctcgcgatgcctgcagatcatctctagtctcttctgtcgtcagagaagctgcggattcggattttgtatggaaaagctttttgcctcaagatattaagcaaattatttctaaatccttgttgccatcgccatcatccttgaattccatctccatgaaggatctctacttccatcttcgaattcaccaccaacacataattttagatggtaacatgagctttgcactagaagagaagagtggaaagaaatgttatatgataggagcaagagggctttcaattgcaggggaagaagacaaactcggttattggcaatggacaaccgtaccagcatctaggttttgtgaagtcgctgagctgaaaaatgtattggggcttgacatcaaggcacacatcaaggcatctttaacatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

159

Amino Acids

17.84

Weight (kDa)

8.35

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 2 cut(s) 205, 243
AfaI GTAC 1 cut(s) 390
AgsI TTSAA 2 cut(s) 205, 342
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 4 cut(s) 113, 141, 282, 421
AluI AGCT 4 cut(s) 113, 141, 282, 421
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 22, 113
ApoI RAATTY 2 cut(s) 205, 243
AsuHPI GGTGA 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 9, 100
BccI CCATC 5 cut(s) 196, 202, 218, 243, 263
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 3 cut(s) 89, 290, 399
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 2 cut(s) 23, 114
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 2 cut(s) 24, 115
BmsI GCATC 4 cut(s) 45, 61, 404, 473
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu1102I GCTNAGC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 383
BseGI GGATG 2 cut(s) 59, 197
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 9, 100
Bsh1236I CGCG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 12, 80, 223
Bsp1720I GCTNAGC 1 cut(s) 417
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 383
BssMI GATC 3 cut(s) 12, 80, 223
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 3 cut(s) 100, 288, 293
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 20, 76
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 59, 197
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 3 cut(s) 15, 83, 226
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 12, 80, 223
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 9, 100
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtgZI GCGATG 2 cut(s) 84, 174
BtsCI GGATG 2 cut(s) 59, 197
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 20, 76
Csp6I GTAC 1 cut(s) 389
CviAII CATG 4 cut(s) 10, 19, 217, 277
CviJI RGCY 6 cut(s) 113, 141, 282, 337, 421, 439
CviKI_1 RGCY 6 cut(s) 113, 141, 282, 337, 421, 439
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 1 cut(s) 417
DpnI GATC 3 cut(s) 14, 82, 225
DpnII GATC 3 cut(s) 12, 80, 223
Eam1104I CTCTTC 3 cut(s) 100, 288, 293
EarI CTCTTC 3 cut(s) 100, 288, 293
EcoRI GAATTC 2 cut(s) 205, 243
FaeI CATG 4 cut(s) 13, 22, 220, 280
FatI CATG 4 cut(s) 9, 18, 216, 276
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 23, 114
FokI GGATG 2 cut(s) 46, 184
Fsp4HI GCNGC 2 cut(s) 23, 114
FspBI CTAG 3 cut(s) 89, 290, 399
GluI GCNGC 2 cut(s) 23, 114
Hin1II CATG 4 cut(s) 13, 22, 220, 280
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 107, 124
Hpy188III TCNNGA 2 cut(s) 68, 152
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 4 cut(s) 36, 78, 287, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 417
Hsp92II CATG 4 cut(s) 13, 22, 220, 280
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 80, 223
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 39, 88, 333, 405
Lsp1109I GCAGC 2 cut(s) 9, 100
LweI GCATC 4 cut(s) 45, 61, 404, 473
MaeI CTAG 3 cut(s) 89, 290, 399
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 14, 82, 225
MboI GATC 3 cut(s) 12, 80, 223
MboII GAAGA 7 cut(s) 16, 87, 230, 305, 310, 365, 368
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 223
MluCI AATT 5 cut(s) 165, 205, 243, 261, 342
MnlI CCTC 3 cut(s) 75, 159, 326
MseI TTAA 2 cut(s) 159, 470
MslI CAYNNNNRTG 1 cut(s) 215
MunI CAATTG 1 cut(s) 342
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 3 cut(s) 12, 80, 223
NlaIII CATG 4 cut(s) 13, 22, 220, 280
NruI TCGCGA 1 cut(s) 69
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 24, 115
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 223
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 159, 470
SatI GCNGC 2 cut(s) 23, 114
Sau3AI GATC 3 cut(s) 12, 80, 223
SetI ASST 5 cut(s) 115, 143, 284, 404, 423
SfaNI GCATC 4 cut(s) 45, 61, 404, 473
SfcI CTRYAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SphI GCATGC 1 cut(s) 22
Sse9I AATT 5 cut(s) 165, 205, 243, 261, 342
SsiI CCGC 1 cut(s) 116
SspMI CTAG 3 cut(s) 89, 290, 399
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 241
TasI AATT 5 cut(s) 165, 205, 243, 261, 342
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 159, 470
Tru9I TTAA 2 cut(s) 159, 470
TseI GCWGC 2 cut(s) 22, 113
TspDTI ATGAA 2 cut(s) 17, 233
XapI RAATTY 2 cut(s) 205, 243
XceI RCATGY 1 cut(s) 22
XspI CTAG 3 cut(s) 89, 290, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.