Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008734.1

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Forward (+)

27067 .. 28240

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008734.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggtgggattagagaggttaccagaagagtgcatagcccatgttctttccctaacctcccctaaagatgcttgccgatcagccttggtctcctctgcgtttggatccgccgctcaatcccaagttgtttgggagagttttttaccctcagaccaccgtgatatcatctcccgatccgtttcttctgtcatcttttcctctaacaaggaactctacttccgtctctgcgattctcccatcgtcctcgacgatgcctggggagacactccaatttactgggagtggatttctgtgcctcactccagatttgccgaggtggcttatctgcactctgtttgttggcttgagatttatggtagattggagatgcgatccctgtctccaaacacagcttatgctggatacttggtttacatgttctccgaagaagccactaattacgcaggaactggacagaattattatgaaacttttccggtcaagctttcagttaagttctttgagaatgatgaaaatctgattgaagctcgtgacgaagatgatgcagagttgttgatatcaacaagaatgcctgctgctgctgctgctgcatcatttatgaatagtagtgttgaaaagcgacaacgctttccgatggagagagacgatggctggatggagattgaggtaggagagttttattctggccaaagtgatggtgactattgcttggtggaaatgggtgtcaaggagatcgaatcagggagttggaagtttgggcttgttatccatggcattgagattcggcccatccaaccgaaacccaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

269

Amino Acids

30.4

Weight (kDa)

4.6

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	108, 111
AclWI	GGATC	4 cut(s)	99, 112, 168, 366
AcoI	YGGCCR	1 cut(s)	685
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	524, 614
AjnI	CCWGG	1 cut(s)	254
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	392, 484, 527
AluI	AGCT	3 cut(s)	392, 484, 527
Alw26I	GTCTC	5 cut(s)	94, 227, 255, 384, 636
AlwI	GGATC	4 cut(s)	99, 112, 168, 366
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	685, 785
ApeKI	GCWGC	5 cut(s)	575, 578, 581, 584, 587
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	528
BbvI	GCAGC	5 cut(s)	562, 565, 568, 571, 574
BccI	CCATC	6 cut(s)	245, 628, 641, 649, 689, 797
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	5 cut(s)	94, 227, 255, 384, 636
BfuI	GTATCC	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	6 cut(s)	111, 576, 579, 582, 585, 588
BlsI	GCNGC	6 cut(s)	112, 577, 580, 583, 586, 589
Bme1390I	CCNGG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	256
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	5 cut(s)	58, 241, 357, 532, 599
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	84, 255, 312, 769
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bse1I	ACTGG	2 cut(s)	281, 454
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	84, 255, 312, 769
BseGI	GGATG	2 cut(s)	660, 789
BseJI	GATNNNNATC	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	281, 454
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	562, 565, 568, 571, 574
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	687, 787
BsiSI	CCGG	1 cut(s)	476
BsmAI	GTCTC	5 cut(s)	94, 227, 255, 384, 636
BsmBI	CGTCTC	2 cut(s)	227, 636
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	687, 787
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	77, 104, 173, 371, 732
Bsp19I	CCATGG	1 cut(s)	769
BspACI	CCGC	2 cut(s)	108, 111
BspANI	GGCC	2 cut(s)	687, 787
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	4 cut(s)	99, 112, 168, 366
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	281, 454
BssECI	CCNNGG	4 cut(s)	84, 255, 312, 769
BssMI	GATC	5 cut(s)	77, 104, 173, 371, 732
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	84, 769
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	73, 573
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	769
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	660, 789
BstKTI	GATC	5 cut(s)	80, 107, 176, 374, 735
BstMAI	GTCTC	5 cut(s)	94, 227, 255, 384, 636
BstMBI	GATC	5 cut(s)	77, 104, 173, 371, 732
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 581, 584, 587
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	5 cut(s)	562, 565, 568, 571, 574
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	2 cut(s)	276, 695
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	687, 787
BtgI	CCRYGG	1 cut(s)	769
BtsCI	GGATG	2 cut(s)	660, 789
Cac8I	GCNNGC	2 cut(s)	73, 573
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	786
CviAII	CATG	3 cut(s)	41, 415, 770
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	5 cut(s)	79, 106, 175, 373, 734
DpnII	GATC	5 cut(s)	77, 104, 173, 371, 732
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	84, 769
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	2 cut(s)	163, 558
Eco91I	GGTNACC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	2 cut(s)	163, 558
EcoT14I	CCWWGG	2 cut(s)	84, 769
ErhI	CCWWGG	2 cut(s)	84, 769
Esp3I	CGTCTC	2 cut(s)	227, 636
FaeI	CATG	3 cut(s)	44, 418, 773
FaiI	YATR	8 cut(s)	35, 42, 354, 396, 416, 465, 599, 771
FatI	CATG	3 cut(s)	40, 414, 769
Fnu4HI	GCNGC	6 cut(s)	111, 576, 579, 582, 585, 588
FokI	GGATG	2 cut(s)	667, 776
Fsp4HI	GCNGC	6 cut(s)	111, 576, 579, 582, 585, 588
GluI	GCNGC	6 cut(s)	111, 576, 579, 582, 585, 588
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	687, 787
HapII	CCGG	1 cut(s)	476
Hin1II	CATG	3 cut(s)	44, 418, 773
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	230, 737, 781
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	151, 424, 519, 633
Hpy188III	TCNNGA	3 cut(s)	171, 303, 530
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	33, 328, 545, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 581, 584, 587
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	44, 418, 773
Kzo9I	GATC	5 cut(s)	77, 104, 173, 371, 732
Lsp1109I	GCAGC	5 cut(s)	562, 565, 568, 571, 574
LweI	GCATC	5 cut(s)	58, 241, 357, 532, 599
MaeIII	GTNAC	3 cut(s)	18, 530, 698
MalI	GATC	5 cut(s)	79, 106, 175, 373, 734
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	5 cut(s)	77, 104, 173, 371, 732
MboII	GAAGA	4 cut(s)	38, 174, 437, 548
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	4 cut(s)	270, 436, 457, 805
MluNI	TGGCCA	1 cut(s)	687
MmeI	TCCRAC	1 cut(s)	728
MnlI	CCTC	9 cut(s)	9, 67, 103, 157, 208, 254, 306, 307, 658
Mox20I	TGGCCA	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	2 cut(s)	492, 808
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	317, 581, 584, 587
NcoI	CCATGG	1 cut(s)	769
NdeII	GATC	5 cut(s)	77, 104, 173, 371, 732
NlaIII	CATG	3 cut(s)	44, 418, 773
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	530, 698
NspI	RCATGY	1 cut(s)	418
PciI	ACATGT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	230, 737, 781
PkrI	GCNGC	6 cut(s)	112, 577, 580, 583, 586, 589
PscI	ACATGT	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	786
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	492, 808
SatI	GCNGC	6 cut(s)	111, 576, 579, 582, 585, 588
Sau3AI	GATC	5 cut(s)	77, 104, 173, 371, 732
Sau96I	GGNCC	1 cut(s)	786
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	7 cut(s)	20, 59, 318, 394, 486, 529, 669
SfaNI	GCATC	5 cut(s)	58, 241, 357, 532, 599
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	270, 436, 457, 805
SsiI	CCGC	2 cut(s)	108, 111
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	2 cut(s)	84, 769
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	246, 735
TasI	AATT	4 cut(s)	270, 436, 457, 805
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	230, 737, 781
Tru1I	TTAA	2 cut(s)	492, 808
Tru9I	TTAA	2 cut(s)	492, 808
TseFI	GTSAC	2 cut(s)	530, 698
TseI	GCWGC	5 cut(s)	575, 578, 581, 584, 587
Tsp45I	GTSAC	2 cut(s)	530, 698
TspDTI	ATGAA	3 cut(s)	480, 525, 614
TspGWI	ACGGA	2 cut(s)	166, 209
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.