Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

826691 .. 833088

Gene Structure 6398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCATCCGATGCGATGGAGTTAACAGATTTGGAGACGTTACCGGAGGAGTGCATGGCCCATGTTCTTTCCCTCACGTCCCCCAAAGACGCGTGCAGATCAGCCGCCGTCTCCTCCGCCTTTCGCTTCGCCGCGCAATCCCAAACTCTTTGGGAACGTTTCTTACCCCATGACTATCGTCAAATCATCTCTCGATCCGTTTCTCCTCCTCTGCCATCAATCTCCTCTCTCTCTAACAAGGACCTCTACTTCCGTCTCTGCGACTCCCCCATCTTCCTCGACGATGGCAATTTGAGTTTCTCATTGGATAAATTGAGTAATAAAAAATGTTGGATGCTGGGAGCCAGACTGTTGAGCATTACATGGGAAGACACTGCAGACTACTGGGAATGGAATTCTCTACCCGAATCCAGGTTCTCCGAAGTGGCTGAGCTCAGATTTGTATGGTGGCTTGAGATTAAGGGAAACATAGACACTAAAATTTTGTCCCCCCGAACAGCCTACGCAGCTTACCTTGTATATCAGTGTCCAGAAGAATCGCAATGGGGGTTTGAGGGAATGCCTATTACGGTGCGTGTCACCAATGAACAAAATGAAGTTGTAGCTGAGCACGATGTGTTCCTAGCAGACCCGCCAGAAGACATGCCTCCACAAGCTCGAAGCAGAGGAGATGGATGGATGGAGATTGAGTTGGGTGAAATTTTCAACCAAGAAGATGATGCTACTGTGGAGTTTCGTCTGAGGGAAACTGTGAGTGGCGAGCCTAAGGGCGGCCTCATTGTGGAAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

264

Amino Acids

30.02

Weight (kDa)

4.43

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	12 - 54	3.2e-08	F-box-like
F-box	PF00646	12 - 52	8.9e-06	F-box domain
PP2	PF14299	108 - 262	2.5e-46	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	92, 134
AciI	CCGC	5 cut(s)	105, 117, 132, 632, 771
AclI	AACGTT	1 cut(s)	157
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	394, 480, 699
AdeI	CACNNNGTG	1 cut(s)	616
AfiI	CCNNNNNNNGG	3 cut(s)	411, 770, 781
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	706
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	4 cut(s)	433, 509, 605, 656
AluI	AGCT	4 cut(s)	433, 509, 605, 656
Alw21I	GWGCWC	2 cut(s)	435, 612
Alw26I	GTCTC	3 cut(s)	29, 115, 260
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	57, 772
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	3 cut(s)	394, 480, 699
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	58, 241
AsuHPI	GGTGA	2 cut(s)	571, 707
AvaII	GGWCC	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	375, 645
Bbv12I	GWGCWC	2 cut(s)	435, 612
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	8 cut(s)	10, 223, 278, 278, 665, 669, 673, 782
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	412
BcoDI	GTCTC	3 cut(s)	29, 115, 260
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	4 cut(s)	105, 132, 507, 772
BlpI	GCTNAGC	2 cut(s)	429, 606
BlsI	GCNGC	4 cut(s)	106, 133, 508, 773
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	58, 241
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	412
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	324, 709
BmuI	ACTGGG	1 cut(s)	394
BoxI	GACNNNNGTC	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	375, 645
Bpu1102I	GCTNAGC	2 cut(s)	429, 606
BpuEI	CTTGAG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 770, 781
Bse1I	ACTGG	1 cut(s)	389
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	412
BseGI	GGATG	4 cut(s)	5, 339, 680, 684
BseLI	CCNNNNNNNGG	3 cut(s)	411, 770, 781
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	4 cut(s)	420, 448, 597, 731
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	6 cut(s)	62, 103, 195, 198, 214, 681
BseXI	GCAGC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	92, 134
BshFI	GGCC	2 cut(s)	59, 774
BsiHKAI	GWGCWC	2 cut(s)	435, 612
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	64, 472
BslI	CCNNNNNNNGG	3 cut(s)	411, 770, 781
BsmAI	GTCTC	3 cut(s)	29, 115, 260
BsmBI	CGTCTC	3 cut(s)	29, 115, 260
BsmFI	GGGAC	2 cut(s)	64, 472
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	59, 774
Bsp1286I	GDGCHC	2 cut(s)	435, 612
Bsp143I	GATC	2 cut(s)	98, 194
Bsp1720I	GCTNAGC	2 cut(s)	429, 606
BspACI	CCGC	5 cut(s)	105, 117, 132, 632, 771
BspANI	GGCC	2 cut(s)	59, 774
BspCNI	CTCAG	4 cut(s)	421, 447, 598, 732
BspFNI	CGCG	2 cut(s)	92, 134
BspLI	GGNNCC	1 cut(s)	343
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	389
BssMI	GATC	2 cut(s)	98, 194
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	4 cut(s)	351, 571, 727, 751
BstC8I	GCNNGC	2 cut(s)	94, 761
BstDEI	CTNAG	5 cut(s)	429, 434, 606, 740, 765
BstF5I	GGATG	4 cut(s)	5, 339, 680, 684
BstFNI	CGCG	2 cut(s)	92, 134
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	101, 197
BstMAI	GTCTC	3 cut(s)	29, 115, 260
BstMBI	GATC	2 cut(s)	98, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	646
BstPAI	GACNNNNGTC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	2 cut(s)	92, 134
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	2 cut(s)	375, 645
Bsu36I	CCTNAGG	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	59, 774
BtgZI	GCGATG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	5, 339, 680, 684
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 530
Cac8I	GCNNGC	2 cut(s)	94, 761
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	58, 241
CseI	GACGC	1 cut(s)	98
CviAII	CATG	5 cut(s)	55, 62, 170, 363, 643
DdeI	CTNAG	5 cut(s)	429, 434, 606, 740, 765
DpnI	GATC	2 cut(s)	100, 196
DpnII	GATC	2 cut(s)	98, 194
DraIII	CACNNNGTG	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	765
EcoICRI	GAGCTC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	435
Esp3I	CGTCTC	3 cut(s)	29, 115, 260
FaeI	CATG	5 cut(s)	58, 65, 173, 366, 646
FaiI	YATR	8 cut(s)	56, 63, 171, 364, 445, 470, 520, 644
FaqI	GGGAC	2 cut(s)	64, 472
FatI	CATG	5 cut(s)	54, 61, 169, 362, 642
FauI	CCCGC	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	105, 132, 507, 772
FokI	GGATG	3 cut(s)	346, 687, 691
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	105, 132, 507, 772
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	105, 132, 507, 772
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	59, 774
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	5 cut(s)	58, 65, 173, 366, 646
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	263, 407, 536
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	571, 707
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	10, 421, 437, 741
Hpy188III	TCNNGA	2 cut(s)	192, 530
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	4 cut(s)	351, 571, 727, 751
HpyCH4IV	ACGT	3 cut(s)	38, 77, 157
HpyCH4V	TGCA	3 cut(s)	54, 96, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	5 cut(s)	429, 434, 606, 740, 765
HpySE526I	ACGT	3 cut(s)	38, 77, 157
Hsp92II	CATG	5 cut(s)	58, 65, 173, 366, 646
HspAI	GCGC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	98, 194
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	8 cut(s)	57, 323, 358, 370, 397, 424, 543, 648
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	2 cut(s)	324, 709
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	3 cut(s)	38, 77, 157
MaeIII	GTNAC	2 cut(s)	39, 577
MalI	GATC	2 cut(s)	100, 196
MboI	GATC	2 cut(s)	98, 194
MboII	GAAGA	5 cut(s)	265, 380, 545, 650, 725
MhlI	GDGCHC	2 cut(s)	435, 612
MluCI	AATT	5 cut(s)	289, 311, 394, 480, 699
MluI	ACGCGT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	311
MseI	TTAA	2 cut(s)	23, 459
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	2 cut(s)	92, 134
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	2 cut(s)	98, 194
NlaIII	CATG	5 cut(s)	58, 65, 173, 366, 646
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	646
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	407, 536
PkrI	GCNGC	4 cut(s)	106, 133, 508, 773
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	435
Psp1406I	AACGTT	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	58, 241
PspPPI	RGGWCCY	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstI	CTGCAG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	23, 459
SatI	GCNGC	4 cut(s)	105, 132, 507, 772
Sau3AI	GATC	2 cut(s)	98, 194
Sau96I	GGNCC	2 cut(s)	58, 241
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	2 cut(s)	435, 612
SfaNI	GCATC	2 cut(s)	324, 709
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	289, 311, 394, 480, 699
SsiI	CCGC	5 cut(s)	105, 117, 132, 632, 771
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	410
TaaI	ACNGT	4 cut(s)	351, 571, 727, 751
TaiI	ACGT	3 cut(s)	41, 80, 160
TaqI	TCGA	3 cut(s)	193, 279, 658
TasI	AATT	5 cut(s)	289, 311, 394, 480, 699
TauI	GCSGC	3 cut(s)	107, 134, 774
TfiI	GAWTC	2 cut(s)	407, 536
Tru1I	TTAA	2 cut(s)	23, 459
Tru9I	TTAA	2 cut(s)	23, 459
TscAI	CASTG	2 cut(s)	379, 530
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	600, 609
TspGWI	ACGGA	2 cut(s)	187, 242
TspRI	CASTG	2 cut(s)	379, 530
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	3 cut(s)	394, 480, 699
XceI	RCATGY	1 cut(s)	646
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.