Prupe.1G003700_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000849
Physical Location & Seq
Reverse (-)
371487 .. 372216
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G003700.1

Sequence Viewer

Length: 441 bp
ATGGATTTCATCAGCACGTTGCCTGCAGAGTGCATCTCCCACATCGTTTCCTGTACAACCCCTCTGGATGCGTGCAGATCATGCCTGGTCTCTTCCCTCTTTCAAATTGCTGCGGATTCTGATATCGTGTGGGAGAGATTTCTTCCCCAAGACCAAGATTATAAGGAAATCATTTCCACTTCTTCCAACTCCTTGTCCAAGAAGGATCTCTACTTTCATCTTTGCAAACACAGCATCATCACAGGCAATGGTAACATGATCACGGCATTACAAAAGCAGAGTGGCAAAAAGAGTTATATGGTAGGGCCAAGAGAGCTTACAGTTGTATTGGAAGATACACCAAAATGTTGGCAAAGTCTAGGTATTCTCTCTCCAGTCTCCACCAATATCTTACTAAATATCACTTCTATTTTTTTCGTGATTTACCTTGTGAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

6.26

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 213
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 94, 382
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 305
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 94, 382
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 42, 58, 243
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 94
BshFI GGCC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 94, 382
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 77, 205, 258
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 253
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 374
BssMI GATC 3 cut(s) 77, 205, 258
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 24, 73
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 3 cut(s) 80, 208, 261
BstMAI GTCTC 2 cut(s) 94, 382
BstMBI GATC 3 cut(s) 77, 205, 258
BstMWI GCNNNNNNNGC 3 cut(s) 81, 231, 313
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 348
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 24, 73
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 81, 256
CviJI RGCY 2 cut(s) 307, 316
CviKI_1 RGCY 2 cut(s) 307, 316
CviQI GTAC 1 cut(s) 54
DpnI GATC 3 cut(s) 79, 207, 260
DpnII GATC 3 cut(s) 77, 205, 258
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 124
FaeI CATG 2 cut(s) 84, 259
FaiI YATR 5 cut(s) 82, 162, 257, 297, 299
FatI CATG 2 cut(s) 80, 255
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 307
Hin1II CATG 2 cut(s) 84, 259
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 65, 418
HpyAV CCTTC 2 cut(s) 196, 427
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 26, 33, 75, 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 231, 313
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 84, 259
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 77, 205, 258
LpnPI CCDG 7 cut(s) 36, 50, 64, 71, 98, 228, 387
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 3 cut(s) 42, 58, 243
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 79, 207, 260
MboI GATC 3 cut(s) 77, 205, 258
MboII GAAGA 4 cut(s) 84, 134, 174, 344
MflI RGATCY 1 cut(s) 205
MluCI AATT 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 2 cut(s) 72, 107
MslI CAYNNNNRTG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 81, 231, 313
NdeII GATC 3 cut(s) 77, 205, 258
NlaIII CATG 2 cut(s) 84, 259
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 343
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 77, 205, 258
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 86
SetI ASST 5 cut(s) 20, 318, 364, 429, 438
SfaNI GCATC 3 cut(s) 42, 58, 243
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 1 cut(s) 116
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 431
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.