Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

684260 .. 685422

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGGGATTAGAGAGGTTGCCAGAAGAGTGCATAGCCCATGTTCTTTCCCTAACCTCCCCTAAAGATGCTTGCCGATCAGCCTTGGTCTCCTCTGCGTTTGGATCCGCCGCTCAATCCCAAGTTGTTTGGGAGAGTTTTTTACCCTCAGACCACCGTGATATCATCTCCCGATCCGTTTCTCCTGTCACCTTTTCCTCTAACAAGGAACTCTACTTCCGTCTCTGCGATTCTCCCATCTTCCTCGACGATGGTAATCTGAGTTTTGCAATAGATAAATTGAGTGGTAAAAAATGTTTGATGCTGGGAGCCAGACGTTTACTCATAGCCTGGGGAGACACTCCAATTTACTGGGAGTGGATTTCTGTGCCTCACTCCAGATTTGCCGAGGTGGCTTATCTGCACTCTGTTTGTTGGCTTGAGATTTATGGTAGATTGGATATGCGATCCCTGTCTCCAAACACAGCTTATGCTGGATACTTGGTTTACATGTTCTCCGAAGAAGCCACTAATTACGCAGGAACTGGACAGAATTATTATGAAACTTTTCCGGTCAAGCTTTCAGTTAAGTTCTTTGAGAATGATGAAAATTTGATTGAAGCTCGTGACGAAGATGATGCAGAGTTGTTGATATCAACAAGAATGCCTGCTGCTGCTGCATCATTTATGAATAGTAGTGTTGAAAAGCGACAACGCTTTCCGATGGAGAGAGACGATGGCTGGATGGAGATTGAGGTAGGAGAGTTTTATTCTGGCCAAAGTGATGGTGACTATTGCTTGGTGGAGATGGGTGTCAAGGAGATCGAATCAGGGAGTTGGAAGTTTGGGCTTGTTATCCATGGCATTGAGATTCGGCCCATCCAACCGAAACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

292

Amino Acids

32.99

Weight (kDa)

4.8

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 45	1.7e-06	F-box domain
F-box-like	PF12937	4 - 46	3.1e-06	F-box-like
PP2	PF14299	97 - 286	1.9e-47	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	108, 111
AclWI	GGATC	4 cut(s)	99, 112, 168, 441
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	2 cut(s)	599, 683
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	467, 559, 602
AluI	AGCT	3 cut(s)	467, 559, 602
Alw26I	GTCTC	5 cut(s)	94, 227, 330, 459, 705
AlwI	GGATC	4 cut(s)	99, 112, 168, 441
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	754, 854
ApeKI	GCWGC	3 cut(s)	650, 653, 656
ApoI	RAATTY	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	855
AsuHPI	GGTGA	2 cut(s)	181, 779
BalI	TGGCCA	1 cut(s)	756
BamHI	GGATCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	637, 640, 643
BccI	CCATC	8 cut(s)	245, 245, 697, 710, 718, 758, 781, 866
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	5 cut(s)	94, 227, 330, 459, 705
BfuI	GTATCC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	4 cut(s)	111, 651, 654, 657
BlsI	GCNGC	4 cut(s)	112, 652, 655, 658
Bme1390I	CCNGG	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	855
BmiI	GGNNCC	2 cut(s)	106, 310
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	4 cut(s)	58, 291, 607, 668
BmuI	ACTGGG	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	84, 330, 387, 838
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bse1I	ACTGG	2 cut(s)	356, 529
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	4 cut(s)	84, 330, 387, 838
BseGI	GGATG	2 cut(s)	729, 858
BseJI	GATNNNNATC	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	162, 251
BseNI	ACTGG	2 cut(s)	356, 529
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	637, 640, 643
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	756, 856
BsiSI	CCGG	1 cut(s)	551
BsmAI	GTCTC	5 cut(s)	94, 227, 330, 459, 705
BsmBI	CGTCTC	2 cut(s)	227, 705
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	756, 856
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	77, 104, 173, 446, 801
Bsp19I	CCATGG	1 cut(s)	838
BspACI	CCGC	2 cut(s)	108, 111
BspANI	GGCC	2 cut(s)	756, 856
BspCNI	CTCAG	2 cut(s)	161, 252
BspLI	GGNNCC	2 cut(s)	106, 310
BspPI	GGATC	4 cut(s)	99, 112, 168, 441
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	356, 529
BssECI	CCNNGG	4 cut(s)	84, 330, 387, 838
BssMI	GATC	5 cut(s)	77, 104, 173, 446, 801
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	2 cut(s)	84, 838
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	73, 648
BstDEI	CTNAG	2 cut(s)	148, 260
BstDSI	CCRYGG	1 cut(s)	838
BstF5I	GGATG	2 cut(s)	729, 858
BstKTI	GATC	5 cut(s)	80, 107, 176, 449, 804
BstMAI	GTCTC	5 cut(s)	94, 227, 330, 459, 705
BstMBI	GATC	5 cut(s)	77, 104, 173, 446, 801
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 656
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	637, 640, 643
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	2 cut(s)	351, 764
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	756, 856
BtgI	CCRYGG	1 cut(s)	838
BtsCI	GGATG	2 cut(s)	729, 858
Cac8I	GCNNGC	2 cut(s)	73, 648
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	855
CviAII	CATG	3 cut(s)	41, 490, 839
DdeI	CTNAG	2 cut(s)	148, 260
DpnI	GATC	5 cut(s)	79, 106, 175, 448, 803
DpnII	GATC	5 cut(s)	77, 104, 173, 446, 801
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	84, 838
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	2 cut(s)	163, 633
EcoRII	CCWGG	1 cut(s)	329
EcoRV	GATATC	2 cut(s)	163, 633
EcoT14I	CCWWGG	2 cut(s)	84, 838
ErhI	CCWWGG	2 cut(s)	84, 838
Esp3I	CGTCTC	2 cut(s)	227, 705
FaeI	CATG	3 cut(s)	44, 493, 842
FatI	CATG	3 cut(s)	40, 489, 838
Fnu4HI	GCNGC	4 cut(s)	111, 651, 654, 657
FokI	GGATG	2 cut(s)	736, 845
Fsp4HI	GCNGC	4 cut(s)	111, 651, 654, 657
GluI	GCNGC	4 cut(s)	111, 651, 654, 657
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	756, 856
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	3 cut(s)	44, 493, 842
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	230, 806, 850
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	181, 779
Hpy166II	GTNNAC	2 cut(s)	320, 487
Hpy188I	TCNGA	4 cut(s)	151, 261, 499, 702
Hpy188III	TCNNGA	3 cut(s)	171, 378, 605
Hpy8I	GTNNAC	2 cut(s)	320, 487
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	33, 269, 403, 620, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 656
HpyF3I	CTNAG	2 cut(s)	148, 260
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	44, 493, 842
Kzo9I	GATC	5 cut(s)	77, 104, 173, 446, 801
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	3 cut(s)	637, 640, 643
LweI	GCATC	4 cut(s)	58, 291, 607, 668
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	187, 605, 767
MalI	GATC	5 cut(s)	79, 106, 175, 448, 803
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	5 cut(s)	77, 104, 173, 446, 801
MboII	GAAGA	4 cut(s)	38, 232, 512, 623
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	6 cut(s)	278, 345, 511, 532, 589, 874
MluNI	TGGCCA	1 cut(s)	756
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	9 cut(s)	9, 67, 103, 157, 208, 254, 381, 382, 727
Mox20I	TGGCCA	1 cut(s)	756
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	2 cut(s)	567, 877
Msp20I	TGGCCA	1 cut(s)	756
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	392, 656
NcoI	CCATGG	1 cut(s)	838
NdeII	GATC	5 cut(s)	77, 104, 173, 446, 801
NlaIII	CATG	3 cut(s)	44, 493, 842
NlaIV	GGNNCC	2 cut(s)	106, 310
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	3 cut(s)	187, 605, 767
NspI	RCATGY	1 cut(s)	493
PciI	ACATGT	1 cut(s)	489
PctI	GAATGC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	3 cut(s)	230, 806, 850
PkrI	GCNGC	4 cut(s)	112, 652, 655, 658
PscI	ACATGT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	106, 310
PspPI	GGNCC	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	567, 877
SatI	GCNGC	4 cut(s)	111, 651, 654, 657
Sau3AI	GATC	5 cut(s)	77, 104, 173, 446, 801
Sau96I	GGNCC	1 cut(s)	855
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	9 cut(s)	20, 59, 194, 319, 393, 469, 561, 604, 738
SfaNI	GCATC	4 cut(s)	58, 291, 607, 668
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	6 cut(s)	278, 345, 511, 532, 589, 874
SsiI	CCGC	2 cut(s)	108, 111
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	84, 838
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	246, 804
TasI	AATT	6 cut(s)	278, 345, 511, 532, 589, 874
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	230, 806, 850
Tru1I	TTAA	2 cut(s)	567, 877
Tru9I	TTAA	2 cut(s)	567, 877
TseFI	GTSAC	3 cut(s)	187, 605, 767
TseI	GCWGC	3 cut(s)	650, 653, 656
Tsp45I	GTSAC	3 cut(s)	187, 605, 767
TspDTI	ATGAA	3 cut(s)	555, 600, 683
TspGWI	ACGGA	2 cut(s)	166, 209
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.