Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

368300 .. 370066

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G003600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGGAAGCAAAAGCAGAAGCAGAGATGAGTATCATCAGCATGTTGCCTGCAGAATGTATCTCCCACATCGTTTCCTGCACAACCCCTCTGGATGCGTGCAGATCATCGCTTGTCTCTTCCCTCTTTAGAATTGCTGCGGATTCTGATATAGTGTGGGAGAGATTTCTGCCCCAGGATTATAAGGAAATCATTTCCACTTCTTTGAACTCCTTGTCCAAGAAGGATCTCTACTTTCATCTTTGCAATCACCCCATCATCATAGGCAATGGTAACATGAGCATGGCACTAGAAAAGCAGAGTGGCAAAAAATGTTATATGGTAGGGGCAAGAGGGCTTTCAGTTATATGGGGAGATACACCCGGATATTGGCGGTGGATATCTCTGCCAGAGTCTAGGTTTTCCCAAGTGGCTAAGCTCAATTATGTATGGTGGCTTGACATCAAGGGATACATAGAGACTAAAAACTTGTCCCCAAGAACAACCTATGCAGCTTATTTTGTCTATCAGCTCTCATCACAACACAATCTAGGGACTGCAGCAACTCCTGTTACATTGCGTGTCGCTTATGAACATAGCGCAGTTGCGGTTGAGCATAGTGTGATCCTAGACCCTGTAAATTATGAAGGTACAGCTCCTCCGCATGCTCGATACAGAGGCGATGGGTGGTTTGAGATTGAGATGGGTGAGTTTGTCACCGAAGAAGATAATGCTACTGTAGTGTGTAGTCTAATGGAAACTAGTAACTACAACTGTAAGACCGGCCTCATTGTGGAAGGCATTGAGCTTAGGCCCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

268

Amino Acids

29.99

Weight (kDa)

5.56

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AciI	CCGC	4 cut(s)	140, 373, 587, 641
AclWI	GGATC	2 cut(s)	234, 598
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	369, 772
AgsI	TTSAA	1 cut(s)	208
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	418, 494, 511, 635, 787
AluI	AGCT	5 cut(s)	418, 494, 511, 635, 787
Alw26I	GTCTC	2 cut(s)	121, 452
AlwI	GGATC	2 cut(s)	234, 598
AoxI	GGCC	2 cut(s)	763, 791
ApeKI	GCWGC	3 cut(s)	137, 491, 539
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	792
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	242, 688, 698
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbvI	GCAGC	3 cut(s)	124, 503, 551
BccI	CCATC	3 cut(s)	263, 656, 676
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	121, 452
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	5 cut(s)	290, 396, 530, 608, 741
BfmI	CTRYAG	3 cut(s)	51, 537, 717
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	3 cut(s)	138, 492, 540
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	139, 493, 541
Bme1390I	CCNGG	2 cut(s)	176, 363
BmgT120I	GGNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	176, 363
BmsI	GCATC	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 772
Bse118I	RCCGGY	1 cut(s)	761
Bse3DI	GCAATG	2 cut(s)	274, 554
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	369, 772
BseMI	GCAATG	2 cut(s)	274, 554
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	124, 503, 551
BsgI	GTGCAG	2 cut(s)	64, 121
BshFI	GGCC	2 cut(s)	765, 793
BsiSI	CCGG	2 cut(s)	363, 762
BslFI	GGGAC	2 cut(s)	457, 547
BslI	CCNNNNNNNGG	2 cut(s)	369, 772
BsmAI	GTCTC	2 cut(s)	121, 452
BsmFI	GGGAC	2 cut(s)	457, 547
BsnI	GGCC	2 cut(s)	765, 793
Bsp143I	GATC	3 cut(s)	104, 226, 603
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	4 cut(s)	140, 373, 587, 641
BspANI	GGCC	2 cut(s)	765, 793
BspMAI	CTGCAG	2 cut(s)	55, 541
BspPI	GGATC	2 cut(s)	234, 598
BsrDI	GCAATG	2 cut(s)	274, 554
BsrFI	RCCGGY	1 cut(s)	761
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	104, 226, 603
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	718, 755
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	51, 100, 645
BstDEI	CTNAG	2 cut(s)	414, 788
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	3 cut(s)	107, 229, 606
BstMAI	GTCTC	2 cut(s)	121, 452
BstMBI	GATC	3 cut(s)	104, 226, 603
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	46, 647
BstSCI	CCNGG	2 cut(s)	174, 361
BstSFI	CTRYAG	3 cut(s)	51, 537, 717
BstV1I	GCAGC	3 cut(s)	124, 503, 551
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	765, 793
BtgZI	GCGATG	2 cut(s)	93, 675
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	51, 100, 645
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	792
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	4 cut(s)	43, 277, 283, 644
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	414, 788
DpnI	GATC	3 cut(s)	106, 228, 605
DpnII	GATC	3 cut(s)	104, 226, 603
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	381
FaeI	CATG	4 cut(s)	46, 280, 286, 647
FaqI	GGGAC	2 cut(s)	457, 547
FatI	CATG	4 cut(s)	42, 276, 282, 643
Fnu4HI	GCNGC	3 cut(s)	138, 492, 540
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	138, 492, 540
FspBI	CTAG	5 cut(s)	290, 396, 530, 608, 741
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	3 cut(s)	138, 492, 540
HaeIII	GGCC	2 cut(s)	765, 793
HapII	CCGG	2 cut(s)	363, 762
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	4 cut(s)	46, 280, 286, 647
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	2 cut(s)	143, 392
HpaII	CCGG	2 cut(s)	363, 762
HphI	GGTGA	3 cut(s)	242, 688, 698
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	217, 620, 770
HpyCH4III	ACNGT	2 cut(s)	718, 755
HpyCH4V	TGCA	6 cut(s)	53, 81, 102, 246, 491, 539
HpyF3I	CTNAG	2 cut(s)	414, 788
Hsp92II	CATG	4 cut(s)	46, 280, 286, 647
HspAI	GCGC	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	104, 226, 603
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	124, 503, 551
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	5 cut(s)	290, 396, 530, 608, 741
MaeIII	GTNAC	4 cut(s)	272, 550, 694, 743
MalI	GATC	3 cut(s)	106, 228, 605
MboI	GATC	3 cut(s)	104, 226, 603
MboII	GAAGA	3 cut(s)	111, 713, 716
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	3 cut(s)	132, 421, 619
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	99, 134, 326, 648, 650, 776
MslI	CAYNNNNRTG	2 cut(s)	41, 281
MspI	CCGG	2 cut(s)	363, 762
MspR9I	CCNGG	2 cut(s)	176, 363
MvaI	CCWGG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	104, 226, 603
NlaIII	CATG	4 cut(s)	46, 280, 286, 647
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	2 cut(s)	46, 647
PaeI	GCATGC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	139, 493, 541
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	792
PstI	CTGCAG	2 cut(s)	55, 541
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	2 cut(s)	41, 281
SatI	GCNGC	3 cut(s)	138, 492, 540
Sau3AI	GATC	3 cut(s)	104, 226, 603
Sau96I	GGNCC	1 cut(s)	792
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	176, 363
SetI	ASST	8 cut(s)	401, 420, 488, 496, 513, 631, 637, 789
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	3 cut(s)	51, 537, 717
SmiMI	CAYNNNNRTG	2 cut(s)	41, 281
SpeI	ACTAGT	1 cut(s)	740
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	3 cut(s)	132, 421, 619
SsiI	CCGC	4 cut(s)	140, 373, 587, 641
SspMI	CTAG	5 cut(s)	290, 396, 530, 608, 741
StyD4I	CCNGG	2 cut(s)	174, 361
TaaI	ACNGT	2 cut(s)	718, 755
TaqI	TCGA	1 cut(s)	649
TasI	AATT	3 cut(s)	132, 421, 619
TfiI	GAWTC	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	3 cut(s)	137, 491, 539
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	17, 227, 585, 639
XceI	RCATGY	2 cut(s)	46, 647
XspI	CTAG	5 cut(s)	290, 396, 530, 608, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.