Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000207.1

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

425 .. 1008

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggtatgcgcaagagggcttacaattgcatggggagatacacccgcttattggcattggataaatctaccacactccaggtttgctgaagtggctgagctcaaacttgtatggtggctggacatcaaagcatgcatagagactaaggatttatccccaggaacaacctatgcagcttaccttgtttatcagctctcacaacacagatatggacttgaatcgcctcttgtgtcgcgtatcagttatcaacaaagtgacgtagtgactgtgcatcgtgtgatcctagaccctaggcctccgctaccgcgagctcgagacagaggagatgggtggatagaggttgagataggtgaatttttcattgaacagggagacgatgatgatattgtacagtgcagtgtaaaggaagtcagtaactctaagcgcggcctcatcgttgaaggtattgaggtgaggcctaaaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

5.35

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AccII	CGCG	3 cut(s)	235, 307, 426
AciI	CCGC	4 cut(s)	45, 299, 305, 426
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	218, 365, 440
AjnI	CCWGG	2 cut(s)	77, 157
AluBI	AGCT	4 cut(s)	100, 176, 193, 311
AluI	AGCT	4 cut(s)	100, 176, 193, 311
Alw21I	GWGCWC	2 cut(s)	102, 313
Alw26I	GTCTC	3 cut(s)	134, 309, 366
AlwI	GGATC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	3 cut(s)	293, 427, 455
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	11, 426
AsuHPI	GGTGA	2 cut(s)	362, 463
AvaI	CYCGRG	1 cut(s)	312
AvrII	CCTAGG	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	102, 313
Bbv12I	GWGCWC	2 cut(s)	102, 313
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	79, 159
BcoDI	GTCTC	3 cut(s)	134, 309, 366
BfaI	CTAG	2 cut(s)	284, 291
BisI	GCNGC	2 cut(s)	174, 427
BlnI	CCTAGG	1 cut(s)	290
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	175, 428
Bme1390I	CCNGG	2 cut(s)	79, 159
BmeT110I	CYCGRG	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	79, 159
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	157, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	79, 159
BseDI	CCNNGG	2 cut(s)	157, 290
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	3 cut(s)	235, 307, 426
BshFI	GGCC	3 cut(s)	295, 429, 457
BsiHKAI	GWGCWC	2 cut(s)	102, 313
BsiHKCI	CYCGRG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	3 cut(s)	134, 309, 366
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	295, 429, 457
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	102, 313
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	279
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	4 cut(s)	45, 299, 305, 426
BspANI	GGCC	3 cut(s)	295, 429, 457
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	3 cut(s)	235, 307, 426
BspPI	GGATC	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	157, 290
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	79, 159
Bst4CI	ACNGT	2 cut(s)	268, 393
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	133, 309
BstDEI	CTNAG	3 cut(s)	96, 144, 420
BstFNI	CGCG	3 cut(s)	235, 307, 426
BstHHI	GCGC	2 cut(s)	11, 426
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	3 cut(s)	134, 309, 366
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	79, 159
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	77, 157
BstUI	CGCG	3 cut(s)	235, 307, 426
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	295, 429, 457
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	398, 403
Cac8I	GCNNGC	2 cut(s)	133, 309
CfoI	GCGC	2 cut(s)	11, 426
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	30, 132
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	3 cut(s)	96, 144, 420
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Ecl136II	GAGCTC	2 cut(s)	100, 311
Eco130I	CCWWGG	1 cut(s)	290
Eco147I	AGGCCT	2 cut(s)	295, 457
Eco24I	GRGCYC	2 cut(s)	102, 313
Eco53kI	GAGCTC	2 cut(s)	100, 311
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	312
EcoICRI	GAGCTC	2 cut(s)	100, 311
EcoRII	CCWGG	2 cut(s)	77, 157
EcoT14I	CCWWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	2 cut(s)	102, 313
ErhI	CCWWGG	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	2 cut(s)	33, 135
FaiI	YATR	7 cut(s)	7, 31, 112, 133, 137, 171, 210
FatI	CATG	2 cut(s)	29, 131
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	174, 427
FriOI	GRGCYC	2 cut(s)	102, 313
Fsp4HI	GCNGC	2 cut(s)	174, 427
FspBI	CTAG	2 cut(s)	284, 291
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	2 cut(s)	10, 425
GluI	GCNGC	2 cut(s)	174, 427
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	295, 429, 457
HhaI	GCGC	2 cut(s)	11, 426
Hin1II	CATG	2 cut(s)	33, 135
Hin6I	GCGC	2 cut(s)	9, 424
HinP1I	GCGC	2 cut(s)	9, 424
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	2 cut(s)	362, 463
Hpy188III	TCNNGA	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	268, 393
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	29, 135, 173, 271, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	96, 144, 420
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	33, 135
HspAI	GCGC	2 cut(s)	9, 424
Kzo9I	GATC	1 cut(s)	279
LpnPI	CCDG	6 cut(s)	64, 91, 104, 144, 171, 353
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	284, 291
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	254, 262, 413
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	102, 313
MluCI	AATT	2 cut(s)	24, 353
MnlI	CCTC	8 cut(s)	8, 234, 306, 314, 331, 440, 442, 447
Mph1103I	ATGCAT	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	79, 159
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	79, 159
MvnI	CGCG	3 cut(s)	235, 307, 426
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	33, 135
NmuCI	GTSAC	2 cut(s)	254, 262
NsbI	TGCGCA	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	137
NspI	RCATGY	1 cut(s)	135
PaeI	GCATGC	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	312
PceI	AGGCCT	2 cut(s)	295, 457
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	175, 428
Psp124BI	GAGCTC	2 cut(s)	102, 313
Psp6I	CCWGG	2 cut(s)	77, 157
PspGI	CCWGG	2 cut(s)	77, 157
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	2 cut(s)	102, 313
SatI	GCNGC	2 cut(s)	174, 427
Sau3AI	GATC	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	79, 159
SduI	GDGCHC	2 cut(s)	102, 313
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	24, 353
SseBI	AGGCCT	2 cut(s)	295, 457
SsiI	CCGC	4 cut(s)	45, 299, 305, 426
SspMI	CTAG	2 cut(s)	284, 291
SstI	GAGCTC	2 cut(s)	102, 313
StuI	AGGCCT	2 cut(s)	295, 457
StyD4I	CCNGG	2 cut(s)	77, 157
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	268, 393
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	313
TasI	AATT	2 cut(s)	24, 353
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	2 cut(s)	398, 403
TseFI	GTSAC	2 cut(s)	254, 262
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	2 cut(s)	254, 262
TspDTI	ATGAA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	398, 403
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	135
XhoI	CTCGAG	1 cut(s)	312
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	284, 291
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.