Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

576579 .. 578402

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCGAATATGTCATATATCTTTTGTTAGGGTTTATTTCAAAGTAGGTAGGTTGGTTGGTTTTGTTTCTGATAGACAGAAAATGGTGGGATTAGAGAGATTACCAGAAGAGTGCATAGCCCATGTTCTTTCCCTAACCTCCCCTAAAGATGCTTGCCGATCAGCCTTGGTCTCCTCTGCGTTTGGATCCGCCGCTCAATCCCAAGTTGTTTGGGAGCGTTTTTTACCCTCAGACCACCGTGACATCATCTCCCGATCCGTTTCTCCTGTCACCTTTTCCTCTAACAAGGAACTCTACTTCCGTCTCTGCGATTTTCCCATCTTCCTCGACGATGGTAATCTGAGTTTTGCAATAGATAAATTGAGTGGCAAAAAATGTTTGATGCTGGGAGCCAGACGTTTACTCATAGCCTGGGGAGACACTCCAATTTACTGGGAGTGGATTTCTGTGCCTCACTCCAGATTTGCCGAGGTGGCTTATCTGCACTCTGTTTGTTGGCTTGAGATTTATGGTAGATTGGAGATGCGATCCCTGTCTCCAAACACAGCTTATGCTGGATACTTGGTTTACATGTTCTCTGAAGAAGCCACTAATTACGCAGGAACTGGACAGAATTATTATGAAACTTTTCCGGTCAAGCTTTCAGTTAAGTTCTTTGAGAATGATGAAAATTTGATTGAAGCTCGTGACGAAGATGATGCAGAGTTGTTGATATCAACAAGAATGCCTGCTGCTGCTGCATCATCTATGAATAGTAGTGTTGAAAAGCGACAACGCTTTCCGATGGAGAGAGACGATGGCTGGATGGAGATTGAGATAGGAGAGTTTTATTCTGGCCAAAGTGATGATGACTATTGCTTGGTGGAGATGGGTGTCAAGGAGATCGAATCAGGGAGTTGGAAGTTTGGGCTTGTTATCCATGGCATTGAGATTCGGCCTATCCAACCGAAACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

319

Amino Acids

36.37

Weight (kDa)

5.22

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	31 - 74	1.1e-06	F-box-like
F-box	PF00646	31 - 72	1.7e-06	F-box domain
PP2	PF14299	124 - 313	3.5e-47	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	2 cut(s)	189, 192
AclWI	GGATC	4 cut(s)	180, 193, 249, 522
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	40, 680, 764
AjnI	CCWGG	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	548, 640, 683
AluI	AGCT	3 cut(s)	548, 640, 683
Alw26I	GTCTC	5 cut(s)	175, 308, 411, 540, 786
AlwI	GGATC	4 cut(s)	180, 193, 249, 522
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	835, 935
ApeKI	GCWGC	3 cut(s)	731, 734, 737
ApoI	RAATTY	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	262
BalI	TGGCCA	1 cut(s)	837
BamHI	GGATCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	684
BbvI	GCAGC	3 cut(s)	718, 721, 724
BccI	CCATC	6 cut(s)	326, 326, 778, 791, 799, 862
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	551
BcoDI	GTCTC	5 cut(s)	175, 308, 411, 540, 786
BfuI	GTATCC	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	4 cut(s)	192, 732, 735, 738
BlsI	GCNGC	4 cut(s)	193, 733, 736, 739
Bme1390I	CCNGG	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	187, 391
BmrFI	CCNGG	1 cut(s)	412
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	5 cut(s)	139, 372, 513, 688, 749
BmuI	ACTGGG	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	165, 411, 468, 919
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse1I	ACTGG	2 cut(s)	437, 610
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	4 cut(s)	165, 411, 468, 919
BseGI	GGATG	1 cut(s)	810
BseJI	GATNNNNATC	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	243, 332
BseNI	ACTGG	2 cut(s)	437, 610
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	718, 721, 724
BseYI	CCCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	837, 937
BsiSI	CCGG	1 cut(s)	632
BsmAI	GTCTC	5 cut(s)	175, 308, 411, 540, 786
BsmBI	CGTCTC	2 cut(s)	308, 786
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	2 cut(s)	837, 937
Bso31I	GGTCTC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	158, 185, 254, 527, 882
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	2 cut(s)	189, 192
BspANI	GGCC	2 cut(s)	837, 937
BspCNI	CTCAG	2 cut(s)	242, 333
BspLI	GGNNCC	2 cut(s)	187, 391
BspPI	GGATC	4 cut(s)	180, 193, 249, 522
BspTNI	GGTCTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	437, 610
BssECI	CCNNGG	4 cut(s)	165, 411, 468, 919
BssMI	GATC	5 cut(s)	158, 185, 254, 527, 882
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	165, 919
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	154, 729
BstDEI	CTNAG	2 cut(s)	229, 341
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	1 cut(s)	810
BstKTI	GATC	5 cut(s)	161, 188, 257, 530, 885
BstMAI	GTCTC	5 cut(s)	175, 308, 411, 540, 786
BstMBI	GATC	5 cut(s)	158, 185, 254, 527, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 737
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	718, 721, 724
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	837, 937
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	154, 729
CaiI	CAGNNNCTG	1 cut(s)	605
CviAII	CATG	3 cut(s)	122, 571, 920
DdeI	CTNAG	2 cut(s)	229, 341
DpnI	GATC	5 cut(s)	160, 187, 256, 529, 884
DpnII	GATC	5 cut(s)	158, 185, 254, 527, 882
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	165, 919
Eco31I	GGTCTC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	714
EcoT14I	CCWWGG	2 cut(s)	165, 919
ErhI	CCWWGG	2 cut(s)	165, 919
Esp3I	CGTCTC	2 cut(s)	308, 786
FaeI	CATG	3 cut(s)	125, 574, 923
FatI	CATG	3 cut(s)	121, 570, 919
Fnu4HI	GCNGC	4 cut(s)	192, 732, 735, 738
FokI	GGATG	1 cut(s)	817
Fsp4HI	GCNGC	4 cut(s)	192, 732, 735, 738
GluI	GCNGC	4 cut(s)	192, 732, 735, 738
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	2 cut(s)	837, 937
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	3 cut(s)	125, 574, 923
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	2 cut(s)	887, 931
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	401, 568
Hpy188I	TCNGA	5 cut(s)	70, 232, 342, 580, 783
Hpy188III	TCNNGA	3 cut(s)	252, 459, 686
Hpy8I	GTNNAC	2 cut(s)	401, 568
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	114, 350, 484, 701, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 737
HpyF3I	CTNAG	2 cut(s)	229, 341
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	125, 574, 923
Kzo9I	GATC	5 cut(s)	158, 185, 254, 527, 882
LmnI	GCTCC	2 cut(s)	214, 389
Lsp1109I	GCAGC	3 cut(s)	718, 721, 724
LweI	GCATC	5 cut(s)	139, 372, 513, 688, 749
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	3 cut(s)	239, 268, 686
MalI	GATC	5 cut(s)	160, 187, 256, 529, 884
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	5 cut(s)	158, 185, 254, 527, 882
MboII	GAAGA	4 cut(s)	119, 313, 593, 704
MflI	RGATCY	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	6 cut(s)	359, 426, 592, 613, 670, 955
MluNI	TGGCCA	1 cut(s)	837
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	7 cut(s)	148, 184, 238, 289, 335, 462, 463
Mox20I	TGGCCA	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	2 cut(s)	648, 958
Msp20I	TGGCCA	1 cut(s)	837
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	473, 737
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	5 cut(s)	158, 185, 254, 527, 882
NlaIII	CATG	3 cut(s)	125, 574, 923
NlaIV	GGNNCC	2 cut(s)	187, 391
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	3 cut(s)	239, 268, 686
NspI	RCATGY	1 cut(s)	574
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	887, 931
PkrI	GCNGC	4 cut(s)	193, 733, 736, 739
PscI	ACATGT	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	187, 391
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	648, 958
SatI	GCNGC	4 cut(s)	192, 732, 735, 738
Sau3AI	GATC	5 cut(s)	158, 185, 254, 527, 882
ScrFI	CCNGG	1 cut(s)	412
SetI	ASST	9 cut(s)	49, 53, 140, 275, 400, 474, 550, 642, 685
SfaNI	GCATC	5 cut(s)	139, 372, 513, 688, 749
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	6 cut(s)	359, 426, 592, 613, 670, 955
SsiI	CCGC	2 cut(s)	189, 192
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	2 cut(s)	165, 919
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	327, 885
TasI	AATT	6 cut(s)	359, 426, 592, 613, 670, 955
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	887, 931
Tru1I	TTAA	2 cut(s)	648, 958
Tru9I	TTAA	2 cut(s)	648, 958
TseFI	GTSAC	3 cut(s)	239, 268, 686
TseI	GCWGC	3 cut(s)	731, 734, 737
Tsp45I	GTSAC	3 cut(s)	239, 268, 686
TspDTI	ATGAA	3 cut(s)	636, 681, 764
TspGWI	ACGGA	2 cut(s)	247, 290
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.