Rmu_sc0008084.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008084.1
OG0000849
Physical Location & Seq
Reverse (-)
8203 .. 9146
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008084.1_g000004.1.cds

Sequence Viewer

Length: 333 bp
atgaaaaggttgcccgtggagtgcgtctcccacatcatttcctttgcatcacctcgcgatgcctgcagatcatcagctgtctgttctctgtttagaatagctgtggattctgatattgtctgggagaggcttcttcctccccattataagcaaatcatttcggaatcttcatcatcgtcctcgtctttcatttccatgcccaagaaggatctctacttttatctctgcactcaccccatcatcataggcaatggtaacatgagctttgcactagataagcagagcggcaagatttgttatatggtaggcacaaccgcacaagagggcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

8.32

Isoelectric Point (pI)

78.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 1 cut(s) 57
AciI CCGC 2 cut(s) 285, 315
AclWI GGATC 1 cut(s) 216
AluBI AGCT 3 cut(s) 77, 101, 264
AluI AGCT 3 cut(s) 77, 101, 264
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 42, 224
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BccI CCATC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmsI GCATC 2 cut(s) 49, 56
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaJI CCNNGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 31
BsmBI CGTCTC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 68, 208
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 2 cut(s) 285, 315
BspFNI CGCG 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 68, 208
BstC8I GCNNGC 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 2 cut(s) 71, 211
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 68, 208
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 72
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 64
CseI GACGC 1 cut(s) 13
CviAII CATG 2 cut(s) 196, 259
CviJI RGCY 5 cut(s) 77, 101, 130, 264, 327
CviKI_1 RGCY 5 cut(s) 77, 101, 130, 264, 327
DpnI GATC 2 cut(s) 70, 210
DpnII GATC 2 cut(s) 68, 208
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 2 cut(s) 199, 262
FaiI YATR 6 cut(s) 147, 197, 245, 260, 300, 302
FatI CATG 2 cut(s) 195, 258
Fnu4HI GCNGC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 286
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 199, 262
HinfI GANTC 2 cut(s) 107, 164
HphI GGTGA 2 cut(s) 42, 224
Hpy188I TCNGA 2 cut(s) 112, 163
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 47, 66, 228, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 199, 262
Kzo9I GATC 2 cut(s) 68, 208
LpnPI CCDG 2 cut(s) 76, 106
LweI GCATC 2 cut(s) 49, 56
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 70, 210
MbiI CCGCTC 1 cut(s) 285
MboI GATC 2 cut(s) 68, 208
MboII GAAGA 2 cut(s) 125, 159
MflI RGATCY 1 cut(s) 208
MnlI CCTC 5 cut(s) 63, 120, 147, 190, 316
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 77
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 2 cut(s) 68, 208
NlaIII CATG 2 cut(s) 199, 262
NruI TCGCGA 1 cut(s) 57
PfeI GAWTC 2 cut(s) 107, 164
PkrI GCNGC 1 cut(s) 287
PsiI TTATAA 1 cut(s) 147
PstI CTGCAG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 77
RruI TCGCGA 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 2 cut(s) 68, 208
SetI ASST 5 cut(s) 11, 55, 79, 103, 266
SfaNI GCATC 2 cut(s) 49, 56
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 194
SsiI CCGC 2 cut(s) 285, 315
SspMI CTAG 1 cut(s) 272
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 2 cut(s) 107, 164
TspDTI ATGAA 3 cut(s) 17, 159, 178
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.