Rw4G000490

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000849
Physical Location & Seq
Forward (+)
1104873 .. 1108234
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000490.1

Sequence Viewer

Length: 879 bp
ATGAAGAACATGATCAGCATGCTGCCTGTGGAGTGCATCTCCCACATCATTTCCCTTACATCCCCTCGCGATGCCTGCAGATCATCTCTAGTCTCTTCTGTCGTCAGAGAAGCTGCGGATTCGGATTTTGTATGGAAAAGCTTTTTGCCTCAAGATATTAAGCAAATTATTTCTAAATCCTTGTTGCCATCGCCATCATCCTTGAATTCCATCTCCATGAAGGATCTCTACTTCCATCTTCGAATTCACCACCAACACATAATTTTAGATGGTAACATGAGCTTTGCACTAGAAAAGCAAAGCGGCAAGAAATGTTATATGGTATGCGCAAGAGGGCTTACAATTGCATGGGGAGATACACCCGCTTATTGGCATTGGATAACTCTACTACACTCCAGGTTTGCTGAAGTGGCTGAGCTCAAACTTATATGGTGGCTGGACATCAAAGCATGCATAGAGACTAAGGATTTATCCCCAGGAACAACCTATGCAGCTTACCTTGTTTATCAGCTCTCACAACACAGATATGGACTTGAATCGCCTCTTGTGTCGCGTATCAGTTATCAACAAAGTGACGTAGTGACTGTGCATCGTGTGATCCTAGACCCTAGGCCTCCGCTACCGCGAGCTCGAGACAGAGGAGATGGGTGGATAGAGGTTGACATAGGTGAATTTTTCATTGAACAGGGAGACGATGATGATATTGTAGAGTGCAGTGTAAAGGAAGTCAGTAACTCTAAGCGCGGCCTCATCGTTGAAGGTATTGAGGTGAGGCCTAAAGGGAGGGCAGGCCTTGGGTATAGGCTCAGCAGGCCTGTGCCTATGGCCCCCCAAGTTCATGGGCCCCGAGATTTAAGTTTACTCTCATATATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

292

Amino Acids

33.02

Weight (kDa)

7.13

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 48 2.3e-06 F-box-like
PP2 PF14299 103 - 259 1.5e-45 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 328
AccII CGCG 4 cut(s) 69, 553, 625, 744
AciI CCGC 6 cut(s) 116, 303, 363, 617, 623, 744
AclWI GGATC 2 cut(s) 231, 592
AcsI RAATTY 3 cut(s) 205, 243, 671
AcuI CTGAAG 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 4 cut(s) 205, 536, 683, 758
AjnI CCWGG 2 cut(s) 395, 475
AluBI AGCT 7 cut(s) 113, 141, 282, 418, 494, 511, 629
AluI AGCT 7 cut(s) 113, 141, 282, 418, 494, 511, 629
Alw21I GWGCWC 2 cut(s) 420, 631
Alw26I GTCTC 4 cut(s) 97, 452, 627, 684
AlwI GGATC 2 cut(s) 231, 592
Ama87I CYCGRG 2 cut(s) 630, 846
AoxI GGCC 7 cut(s) 611, 745, 773, 790, 812, 825, 842
ApaI GGGCCC 1 cut(s) 846
ApeKI GCWGC 3 cut(s) 22, 113, 491
ApoI RAATTY 3 cut(s) 205, 243, 671
AspA2I CCTAGG 1 cut(s) 608
AspLEI GCGC 2 cut(s) 329, 744
AspS9I GGNCC 3 cut(s) 826, 842, 843
AsuHPI GGTGA 3 cut(s) 239, 680, 781
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 2 cut(s) 630, 846
AvrII CCTAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 846
BanII GRGCYC 3 cut(s) 420, 631, 846
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
Bbv12I GWGCWC 2 cut(s) 420, 631
BbvI GCAGC 3 cut(s) 9, 100, 503
BccI CCATC 6 cut(s) 196, 202, 218, 243, 263, 638
BciT130I CCWGG 2 cut(s) 397, 477
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 4 cut(s) 97, 452, 627, 684
BfaI CTAG 4 cut(s) 89, 290, 602, 609
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 5 cut(s) 23, 114, 304, 492, 745
BlnI CCTAGG 1 cut(s) 608
BlpI GCTNAGC 2 cut(s) 414, 806
BlsI GCNGC 5 cut(s) 24, 115, 305, 493, 746
Bme1390I CCNGG 2 cut(s) 397, 477
BmeT110I CYCGRG 2 cut(s) 630, 846
BmgT120I GGNCC 3 cut(s) 826, 842, 843
BmiI GGNNCC 3 cut(s) 828, 844, 845
BmrFI CCNGG 2 cut(s) 397, 477
BmsI GCATC 3 cut(s) 45, 61, 598
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 379
Bpu1102I GCTNAGC 2 cut(s) 414, 806
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 475, 608, 793
Bsc4I CCNNNNNNNGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 397, 477
BseDI CCNNGG 3 cut(s) 475, 608, 793
BseGI GGATG 2 cut(s) 59, 197
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 405, 820
BseRI GAGGAG 1 cut(s) 654
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 3 cut(s) 9, 100, 503
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 4 cut(s) 69, 553, 625, 744
BshFI GGCC 7 cut(s) 613, 747, 775, 792, 814, 827, 844
BsiHKAI GWGCWC 2 cut(s) 420, 631
BsiHKCI CYCGRG 2 cut(s) 630, 846
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 4 cut(s) 97, 452, 627, 684
BsmBI CGTCTC 1 cut(s) 684
BsnI GGCC 7 cut(s) 613, 747, 775, 792, 814, 827, 844
BsoBI CYCGRG 2 cut(s) 630, 846
Bsp119I TTCGAA 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 420, 631, 846
Bsp143I GATC 4 cut(s) 12, 80, 223, 597
Bsp1720I GCTNAGC 2 cut(s) 414, 806
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 6 cut(s) 116, 303, 363, 617, 623, 744
BspANI GGCC 7 cut(s) 613, 747, 775, 792, 814, 827, 844
BspCNI CTCAG 2 cut(s) 406, 819
BspFNI CGCG 4 cut(s) 69, 553, 625, 744
BspLI GGNNCC 3 cut(s) 828, 844, 845
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 2 cut(s) 231, 592
BspT104I TTCGAA 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 475, 608, 793
BssMI GATC 4 cut(s) 12, 80, 223, 597
BssT1I CCWWGG 2 cut(s) 608, 793
Bst2UI CCWGG 2 cut(s) 397, 477
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 6 cut(s) 20, 76, 451, 627, 790, 812
BstDEI CTNAG 4 cut(s) 414, 462, 738, 806
BstF5I GGATG 2 cut(s) 59, 197
BstFNI CGCG 4 cut(s) 69, 553, 625, 744
BstHHI GCGC 2 cut(s) 329, 744
BstKTI GATC 4 cut(s) 15, 83, 226, 600
BstMAI GTCTC 4 cut(s) 97, 452, 627, 684
BstMBI GATC 4 cut(s) 12, 80, 223, 597
BstMWI GCNNNNNNNGC 3 cut(s) 75, 410, 811
BstNI CCWGG 2 cut(s) 397, 477
BstNSI RCATGY 2 cut(s) 22, 453
BstSCI CCNGG 2 cut(s) 395, 475
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 4 cut(s) 69, 553, 625, 744
BstV1I GCAGC 3 cut(s) 9, 100, 503
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 7 cut(s) 613, 747, 775, 792, 814, 827, 844
BtgZI GCGATG 2 cut(s) 84, 174
BtsCI GGATG 2 cut(s) 59, 197
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 721
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 6 cut(s) 20, 76, 451, 627, 790, 812
CfoI GCGC 2 cut(s) 329, 744
Cfr13I GGNCC 3 cut(s) 826, 842, 843
CviAII CATG 7 cut(s) 10, 19, 217, 277, 348, 450, 839
DdeI CTNAG 4 cut(s) 414, 462, 738, 806
DpnI GATC 4 cut(s) 14, 82, 225, 599
DpnII GATC 4 cut(s) 12, 80, 223, 597
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 2 cut(s) 418, 629
Eco130I CCWWGG 2 cut(s) 608, 793
Eco147I AGGCCT 4 cut(s) 613, 775, 792, 814
Eco24I GRGCYC 3 cut(s) 420, 631, 846
Eco53kI GAGCTC 2 cut(s) 418, 629
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 630, 846
EcoICRI GAGCTC 2 cut(s) 418, 629
EcoO109I RGGNCCY 1 cut(s) 843
EcoRI GAATTC 2 cut(s) 205, 243
EcoRII CCWGG 2 cut(s) 395, 475
EcoT14I CCWWGG 2 cut(s) 608, 793
EcoT22I ATGCAT 1 cut(s) 455
EcoT38I GRGCYC 3 cut(s) 420, 631, 846
ErhI CCWWGG 2 cut(s) 608, 793
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 7 cut(s) 13, 22, 220, 280, 351, 453, 842
FatI CATG 7 cut(s) 9, 18, 216, 276, 347, 449, 838
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 5 cut(s) 23, 114, 304, 492, 745
FokI GGATG 2 cut(s) 46, 184
FriOI GRGCYC 3 cut(s) 420, 631, 846
Fsp4HI GCNGC 5 cut(s) 23, 114, 304, 492, 745
FspBI CTAG 4 cut(s) 89, 290, 602, 609
FspI TGCGCA 1 cut(s) 328
GlaI GCGC 2 cut(s) 328, 743
GluI GCNGC 5 cut(s) 23, 114, 304, 492, 745
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 7 cut(s) 613, 747, 775, 792, 814, 827, 844
HhaI GCGC 2 cut(s) 329, 744
Hin1II CATG 7 cut(s) 13, 22, 220, 280, 351, 453, 842
Hin6I GCGC 2 cut(s) 327, 742
HinP1I GCGC 2 cut(s) 327, 742
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 119, 536
HphI GGTGA 3 cut(s) 239, 680, 781
Hpy166II GTNNAC 2 cut(s) 661, 860
Hpy188I TCNGA 2 cut(s) 107, 124
Hpy188III TCNNGA 3 cut(s) 68, 152, 632
Hpy8I GTNNAC 2 cut(s) 661, 860
HpyAV CCTTC 2 cut(s) 214, 752
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 8 cut(s) 36, 78, 287, 347, 453, 491, 589, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 410, 811
HpyF3I CTNAG 4 cut(s) 414, 462, 738, 806
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 7 cut(s) 13, 22, 220, 280, 351, 453, 842
HspAI GCGC 2 cut(s) 327, 742
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 4 cut(s) 12, 80, 223, 597
Lsp1109I GCAGC 3 cut(s) 9, 100, 503
LweI GCATC 3 cut(s) 45, 61, 598
MaeI CTAG 4 cut(s) 89, 290, 602, 609
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 4 cut(s) 272, 572, 580, 731
MalI GATC 4 cut(s) 14, 82, 225, 599
MboI GATC 4 cut(s) 12, 80, 223, 597
MboII GAAGA 3 cut(s) 16, 87, 230
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 3 cut(s) 420, 631, 846
MluCI AATT 6 cut(s) 165, 205, 243, 261, 342, 671
Mph1103I ATGCAT 1 cut(s) 455
MseI TTAA 3 cut(s) 159, 854, 877
MslI CAYNNNNRTG 3 cut(s) 215, 525, 871
MspR9I CCNGG 2 cut(s) 397, 477
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 2 cut(s) 397, 477
MvnI CGCG 4 cut(s) 69, 553, 625, 744
MwoI GCNNNNNNNGC 3 cut(s) 75, 410, 811
NdeII GATC 4 cut(s) 12, 80, 223, 597
NlaIII CATG 7 cut(s) 13, 22, 220, 280, 351, 453, 842
NlaIV GGNNCC 3 cut(s) 828, 844, 845
NmuCI GTSAC 2 cut(s) 572, 580
NruI TCGCGA 1 cut(s) 69
NsbI TGCGCA 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 2 cut(s) 22, 453
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 2 cut(s) 22, 453
PaeR7I CTCGAG 1 cut(s) 630
PceI AGGCCT 4 cut(s) 613, 775, 792, 814
PfeI GAWTC 2 cut(s) 119, 536
PkrI GCNGC 5 cut(s) 24, 115, 305, 493, 746
Psp124BI GAGCTC 2 cut(s) 420, 631
Psp6I CCWGG 2 cut(s) 395, 475
PspGI CCWGG 2 cut(s) 395, 475
PspN4I GGNNCC 3 cut(s) 828, 844, 845
PspOMI GGGCCC 1 cut(s) 842
PspPI GGNCC 3 cut(s) 826, 842, 843
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 223
RruI TCGCGA 1 cut(s) 69
RseI CAYNNNNRTG 3 cut(s) 215, 525, 871
SacI GAGCTC 2 cut(s) 420, 631
SaqAI TTAA 3 cut(s) 159, 854, 877
SatI GCNGC 5 cut(s) 23, 114, 304, 492, 745
Sau3AI GATC 4 cut(s) 12, 80, 223, 597
Sau96I GGNCC 3 cut(s) 826, 842, 843
ScrFI CCNGG 2 cut(s) 397, 477
SduI GDGCHC 3 cut(s) 420, 631, 846
SfaNI GCATC 3 cut(s) 45, 61, 598
SfcI CTRYAG 1 cut(s) 76
Sfr274I CTCGAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 3 cut(s) 215, 525, 871
SmlI CTYRAG 2 cut(s) 150, 630
SmoI CTYRAG 2 cut(s) 150, 630
SphI GCATGC 2 cut(s) 22, 453
Sse9I AATT 6 cut(s) 165, 205, 243, 261, 342, 671
SseBI AGGCCT 4 cut(s) 613, 775, 792, 814
SsiI CCGC 6 cut(s) 116, 303, 363, 617, 623, 744
SspMI CTAG 4 cut(s) 89, 290, 602, 609
SstI GAGCTC 2 cut(s) 420, 631
StuI AGGCCT 4 cut(s) 613, 775, 792, 814
StyD4I CCNGG 2 cut(s) 395, 475
StyI CCWWGG 2 cut(s) 608, 793
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 579
TaqI TCGA 2 cut(s) 241, 631
TasI AATT 6 cut(s) 165, 205, 243, 261, 342, 671
TauI GCSGC 2 cut(s) 306, 747
TfiI GAWTC 2 cut(s) 119, 536
Tru1I TTAA 3 cut(s) 159, 854, 877
Tru9I TTAA 3 cut(s) 159, 854, 877
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 572, 580
TseI GCWGC 3 cut(s) 22, 113, 491
Tsp45I GTSAC 2 cut(s) 572, 580
TspDTI ATGAA 4 cut(s) 17, 233, 667, 827
TspRI CASTG 1 cut(s) 721
XapI RAATTY 3 cut(s) 205, 243, 671
XceI RCATGY 2 cut(s) 22, 453
XhoI CTCGAG 1 cut(s) 630
XmaJI CCTAGG 1 cut(s) 608
XspI CTAG 4 cut(s) 89, 290, 602, 609
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.