Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Forward (+)

1150988 .. 1152773

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGTTAACAGATTTGGAGACGTTACCGGGGGAGTGCATGGCCCATGTTCTTTCCCTCACGTCCCCCAAAGACGCGTGCAGATCAGCCGCCGTCTCCTCCGCCTTTCGCTTCGCCGCGCAATCCCAAACTCTTTGGGAACGTTTCTTACCCCATGACTATCGTCAAATCATCTCTCGATCCGTTTCTCCTCCTCTGCCATCAATCTCCTCTCTCTCTAACAAGGACCTCTACTTCCGTCTCTGCGACTCCCCCATCTTCCTCGACCATGGCAATTTGAGTTTCTCATTGGATAAATTGAGTGGTAAAAAATGTTGGATGCTGGGAGCCAGACTGTTGAGCATTACATGGGCAGACACTCCAGACTACTGGGAATGGAATTCTCTACCCGAATCCAGGTTCTCCGAAGTGGCTGAGCTCAGATTTGTATGGTGGCTTGAGATTAAGGGAAACATAGACACTAAAATTTTGTCCCCCCGAACAGCCTACGCAGCTTACCTTGTATATCAGTGTCCAGAAGAATCGCAATGGGGGTTTGAGGGAATGCCTATTACGGTGCGTGTCACCAATGAACAAAATGAAGTTGTAGCTGAGCATGATGTGTTCCTAGCAGACCCGCCAGAAGACATGCCTCCACAAGCTCGAAGCAGAGGAGATGGATGGATGGAGATTGAGTTGGGTGAAATTTTCAACCAAGAAGATGATGCTACTGTGGAGTTTCGTCTGAGGGAAACTGAGAGTGGCGAGCCTAAGGGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTAAACTATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

267

Amino Acids

30.43

Weight (kDa)

4.66

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 49	4.8e-07	F-box-like
PP2	PF14299	103 - 263	1.5e-51	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 119
AciI	CCGC	5 cut(s)	90, 102, 117, 617, 756
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	379, 465, 684
AfiI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	5 cut(s)	418, 494, 590, 641, 781
AluI	AGCT	5 cut(s)	418, 494, 590, 641, 781
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	3 cut(s)	14, 100, 245
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	42, 757, 785
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	3 cut(s)	379, 465, 684
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	43, 226
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	556, 692
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	5 cut(s)	208, 263, 650, 654, 658
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	14, 100, 245
BfaI	CTAG	1 cut(s)	608
BisI	GCNGC	4 cut(s)	90, 117, 492, 757
BlpI	GCTNAGC	2 cut(s)	414, 591
BlsI	GCNGC	4 cut(s)	91, 118, 493, 758
Bme1390I	CCNGG	2 cut(s)	30, 397
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	43, 226
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	30, 397
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	309, 694
BmuI	ACTGGG	1 cut(s)	379
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu1102I	GCTNAGC	2 cut(s)	414, 591
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	29, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 755, 766
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	750
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	29, 268
BseGI	GGATG	3 cut(s)	324, 665, 669
BseLI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	5 cut(s)	405, 433, 582, 716, 726
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	5 cut(s)	88, 180, 183, 199, 666
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	77, 119
BshFI	GGCC	3 cut(s)	44, 759, 787
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	49, 457
BslI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BsmAI	GTCTC	3 cut(s)	14, 100, 245
BsmBI	CGTCTC	3 cut(s)	14, 100, 245
BsmFI	GGGAC	2 cut(s)	49, 457
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	44, 759, 787
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	83, 179
Bsp1720I	GCTNAGC	2 cut(s)	414, 591
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	5 cut(s)	90, 102, 117, 617, 756
BspANI	GGCC	3 cut(s)	44, 759, 787
BspCNI	CTCAG	5 cut(s)	406, 432, 583, 717, 727
BspFNI	CGCG	2 cut(s)	77, 119
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	29, 268
BssMI	GATC	2 cut(s)	83, 179
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	3 cut(s)	336, 556, 712
BstC8I	GCNNGC	2 cut(s)	79, 746
BstDEI	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	324, 665, 669
BstFNI	CGCG	2 cut(s)	77, 119
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	86, 182
BstMAI	GTCTC	3 cut(s)	14, 100, 245
BstMBI	GATC	2 cut(s)	83, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	28, 395
BstUI	CGCG	2 cut(s)	77, 119
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	44, 759, 787
BtgI	CCRYGG	1 cut(s)	268
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	324, 665, 669
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	79, 746
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	43, 226
CseI	GACGC	1 cut(s)	83
CviAII	CATG	7 cut(s)	40, 47, 155, 269, 348, 596, 628
DdeI	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
DpnI	GATC	2 cut(s)	85, 181
DpnII	GATC	2 cut(s)	83, 179
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	3 cut(s)	14, 100, 245
FaeI	CATG	7 cut(s)	43, 50, 158, 272, 351, 599, 631
FaqI	GGGAC	2 cut(s)	49, 457
FatI	CATG	7 cut(s)	39, 46, 154, 268, 347, 595, 627
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FokI	GGATG	3 cut(s)	331, 672, 676
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	90, 117, 492, 757
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	44, 759, 787
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	7 cut(s)	43, 50, 158, 272, 351, 599, 631
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	248, 392, 521
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	556, 692
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	406, 422, 726
Hpy188III	TCNNGA	3 cut(s)	177, 362, 515
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	3 cut(s)	336, 556, 712
HpyCH4IV	ACGT	3 cut(s)	23, 62, 142
HpyCH4V	TGCA	2 cut(s)	39, 81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
HpySE526I	ACGT	3 cut(s)	23, 62, 142
Hsp92II	CATG	7 cut(s)	43, 50, 158, 272, 351, 599, 631
HspAI	GCGC	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	83, 179
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	42, 308, 343, 355, 375, 382, 409, 528, 633
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	309, 694
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	3 cut(s)	23, 62, 142
MaeIII	GTNAC	2 cut(s)	24, 562
MalI	GATC	2 cut(s)	85, 181
MboI	GATC	2 cut(s)	83, 179
MboII	GAAGA	4 cut(s)	250, 530, 635, 710
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	5 cut(s)	274, 296, 379, 465, 684
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	296
MseI	TTAA	2 cut(s)	8, 444
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	30, 397
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	77, 119
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	83, 179
NlaIII	CATG	7 cut(s)	43, 50, 158, 272, 351, 599, 631
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	787
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	392, 521
PkrI	GCNGC	4 cut(s)	91, 118, 493, 758
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	43, 226
PspPPI	RGGWCCY	1 cut(s)	226
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	8, 444
SatI	GCNGC	4 cut(s)	90, 117, 492, 757
Sau3AI	GATC	2 cut(s)	83, 179
Sau96I	GGNCC	2 cut(s)	43, 226
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	30, 397
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	309, 694
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	274, 296, 379, 465, 684
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	5 cut(s)	90, 102, 117, 617, 756
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	2 cut(s)	28, 395
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	336, 556, 712
TaiI	ACGT	3 cut(s)	26, 65, 145
TaqI	TCGA	3 cut(s)	178, 264, 643
TasI	AATT	5 cut(s)	274, 296, 379, 465, 684
TauI	GCSGC	3 cut(s)	92, 119, 759
TfiI	GAWTC	2 cut(s)	392, 521
Tru1I	TTAA	2 cut(s)	8, 444
Tru9I	TTAA	2 cut(s)	8, 444
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	2 cut(s)	585, 594
TspGWI	ACGGA	2 cut(s)	172, 227
TspRI	CASTG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	3 cut(s)	379, 465, 684
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.