Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

733354 .. 735082

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCATCCGATGCGATGGAGTTAACAGATTTGGAGACGTTACCGGAGGAGTGCATGGCCCATGTTCTTTCCCTCACGTCCCCAAAGACGCGTGCAGATCAGCCGCCGTCTCCTCCGCCTTTCGCTTCGCCGCGCAATCCCAAACTCTTTGGGAACGTTTCTTACCCCATGACTATCGTCAAATCATCTCTCGATCCGTTTCTCCTCCTCTGCCATCAATCTCCTCTCTCTCTAACAAGGACCTCTACTTCCGTCTCTGCGACTCCCCCATCTTCCTCGACGATGGCAATTTGTTTCTCATTGGATAAATTGAGTAATAAAAAATGTTGGATGCTGGGAGCCAGACTGTTGAGCATTACATGGGAAGACACTGCAGACTACTGGGAATGGAATTCTCTACCCGAATCCAGGTTCTCCGAAGTGGCTGAGCTCAGATTTGTATGGTGGCTTGAGATTAAGGGAAACATAGACACTAAAATTTTGTCCCCCCGAACAGCCTACGCAGCTTACCTTGTATATCAGTGTCCAGAAGAATCGCAATGGGGGTTTGAGGGAATGCCTATTACGGTGCGTGTCACCAATGAACAAAATGAAGTTGTAGCTGAGCACGATGTGTTCCTAGCAGACCCGCCAGAAGACATGCCTCCACAAGCTCGAAGCAGAGGAGATGGATGGATGGAGATTGAGTTGGGTGAAATTTTCAACCAAGAAGATGATGCTACTGTGGAGTTTCGTCTGAGGGAAACTGTGAGTGGCGAGCCTAAGGGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTAAACTATATATATATAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

274

Amino Acids

30.84

Weight (kDa)

4.59

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	107 - 267	3.3e-50	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	91, 133
AciI	CCGC	5 cut(s)	104, 116, 131, 629, 768
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	3 cut(s)	391, 477, 696
AdeI	CACNNNGTG	1 cut(s)	613
AfaI	GTAC	1 cut(s)	820
AfiI	CCNNNNNNNGG	3 cut(s)	408, 767, 778
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	703
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	5 cut(s)	430, 506, 602, 653, 793
AluI	AGCT	5 cut(s)	430, 506, 602, 653, 793
Alw21I	GWGCWC	2 cut(s)	432, 609
Alw26I	GTCTC	3 cut(s)	29, 114, 259
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	57, 769, 797
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	3 cut(s)	391, 477, 696
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	58, 240
AsuHPI	GGTGA	2 cut(s)	568, 704
AvaII	GGWCC	1 cut(s)	240
AxyI	CCTNAGG	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	372, 642
Bbv12I	GWGCWC	2 cut(s)	432, 609
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	7 cut(s)	10, 222, 277, 277, 662, 666, 670
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	29, 114, 259
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	4 cut(s)	104, 131, 504, 769
BlpI	GCTNAGC	2 cut(s)	426, 603
BlsI	GCNGC	4 cut(s)	105, 132, 505, 770
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	58, 240
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	321, 706
BmuI	ACTGGG	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	372, 642
Bpu10I	CCTNAGC	1 cut(s)	794
Bpu1102I	GCTNAGC	2 cut(s)	426, 603
BpuEI	CTTGAG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 767, 778
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	409
BseGI	GGATG	4 cut(s)	5, 336, 677, 681
BseLI	CCNNNNNNNGG	3 cut(s)	408, 767, 778
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	4 cut(s)	417, 445, 594, 728
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	6 cut(s)	62, 102, 194, 197, 213, 678
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	91, 133
BshFI	GGCC	3 cut(s)	59, 771, 799
BsiHKAI	GWGCWC	2 cut(s)	432, 609
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	64, 469
BslI	CCNNNNNNNGG	3 cut(s)	408, 767, 778
BsmAI	GTCTC	3 cut(s)	29, 114, 259
BsmBI	CGTCTC	3 cut(s)	29, 114, 259
BsmFI	GGGAC	2 cut(s)	64, 469
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	59, 771, 799
Bsp1286I	GDGCHC	2 cut(s)	432, 609
Bsp143I	GATC	2 cut(s)	97, 193
Bsp1720I	GCTNAGC	2 cut(s)	426, 603
BspACI	CCGC	5 cut(s)	104, 116, 131, 629, 768
BspANI	GGCC	3 cut(s)	59, 771, 799
BspCNI	CTCAG	4 cut(s)	418, 444, 595, 729
BspFNI	CGCG	2 cut(s)	91, 133
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	97, 193
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	4 cut(s)	348, 568, 724, 748
BstC8I	GCNNGC	2 cut(s)	93, 758
BstDEI	CTNAG	6 cut(s)	426, 431, 603, 737, 762, 794
BstF5I	GGATG	4 cut(s)	5, 336, 677, 681
BstFNI	CGCG	2 cut(s)	91, 133
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	100, 196
BstMAI	GTCTC	3 cut(s)	29, 114, 259
BstMBI	GATC	2 cut(s)	97, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	643
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	2 cut(s)	91, 133
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	2 cut(s)	372, 642
Bsu36I	CCTNAGG	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	59, 771, 799
BtgZI	GCGATG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	5, 336, 677, 681
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 527
Cac8I	GCNNGC	2 cut(s)	93, 758
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	58, 240
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	819
CviAII	CATG	5 cut(s)	55, 62, 169, 360, 640
CviQI	GTAC	1 cut(s)	819
DdeI	CTNAG	6 cut(s)	426, 431, 603, 737, 762, 794
DpnI	GATC	2 cut(s)	99, 195
DpnII	GATC	2 cut(s)	97, 193
DraIII	CACNNNGTG	1 cut(s)	613
EciI	GGCGGA	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	762
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	432
Esp3I	CGTCTC	3 cut(s)	29, 114, 259
FaeI	CATG	5 cut(s)	58, 65, 172, 363, 643
FaqI	GGGAC	2 cut(s)	64, 469
FatI	CATG	5 cut(s)	54, 61, 168, 359, 639
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	104, 131, 504, 769
FokI	GGATG	3 cut(s)	343, 684, 688
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	104, 131, 504, 769
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	104, 131, 504, 769
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	59, 771, 799
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	58, 65, 172, 363, 643
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	262, 404, 533
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	568, 704
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	10, 418, 434, 738
Hpy188III	TCNNGA	2 cut(s)	191, 527
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	4 cut(s)	348, 568, 724, 748
HpyCH4IV	ACGT	3 cut(s)	38, 77, 156
HpyCH4V	TGCA	3 cut(s)	54, 95, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	6 cut(s)	426, 431, 603, 737, 762, 794
HpySE526I	ACGT	3 cut(s)	38, 77, 156
Hsp92II	CATG	5 cut(s)	58, 65, 172, 363, 643
HspAI	GCGC	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	97, 193
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	8 cut(s)	57, 320, 355, 367, 394, 421, 540, 645
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	321, 706
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	3 cut(s)	38, 77, 156
MaeIII	GTNAC	2 cut(s)	39, 574
MalI	GATC	2 cut(s)	99, 195
MboI	GATC	2 cut(s)	97, 193
MboII	GAAGA	5 cut(s)	264, 377, 542, 647, 722
MhlI	GDGCHC	2 cut(s)	432, 609
MluCI	AATT	5 cut(s)	288, 308, 391, 477, 696
MluI	ACGCGT	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	308
MseI	TTAA	2 cut(s)	23, 456
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	2 cut(s)	91, 133
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	97, 193
NlaIII	CATG	5 cut(s)	58, 65, 172, 363, 643
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	574
NspI	RCATGY	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	799
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	404, 533
PkrI	GCNGC	4 cut(s)	105, 132, 505, 770
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	58, 240
PspPPI	RGGWCCY	1 cut(s)	240
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PstI	CTGCAG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	820
RsaNI	GTAC	1 cut(s)	819
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	23, 456
SatI	GCNGC	4 cut(s)	104, 131, 504, 769
Sau3AI	GATC	2 cut(s)	97, 193
Sau96I	GGNCC	2 cut(s)	58, 240
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	432, 609
SfaNI	GCATC	2 cut(s)	321, 706
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	5 cut(s)	288, 308, 391, 477, 696
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	5 cut(s)	104, 116, 131, 629, 768
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	407
TaaI	ACNGT	4 cut(s)	348, 568, 724, 748
TaiI	ACGT	3 cut(s)	41, 80, 159
TaqI	TCGA	3 cut(s)	192, 278, 655
TasI	AATT	5 cut(s)	288, 308, 391, 477, 696
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	3 cut(s)	106, 133, 771
TfiI	GAWTC	2 cut(s)	404, 533
Tru1I	TTAA	2 cut(s)	23, 456
Tru9I	TTAA	2 cut(s)	23, 456
TscAI	CASTG	2 cut(s)	376, 527
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	2 cut(s)	597, 606
TspGWI	ACGGA	2 cut(s)	186, 241
TspRI	CASTG	2 cut(s)	376, 527
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	391, 477, 696
XceI	RCATGY	1 cut(s)	643
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.