Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

551700 .. 552247

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1004100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCATAGAGACGAAAAAGTTATCCCCACGAACGACGTATACAGCTTAGCTTACCTTGTCTATAAGCTCCCCGAAGAATCCAAATGGGGGTTTGAAGGAACGCCGATTACGTTGCATATCGTTTACAAACAAAGAGGAGTTGCAGAGGATCATAGCATGATCCTAGACCCTCTAGAAGATATGCCTCGAAATGCTCGGCGGCGTGGAAGAGACCGGTGGACAGAGATTGAGATGGGCGAATTCTTCAATGGAGGAGGAGATAATGCAACAGTAGAATGTAGTCTAAGGGAAACTAGTAGTGACATACCTAAGAGCGGCCTCATTGTGGAAGGTATTGATCCTAGGCCTAAGAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

120

Amino Acids

13.56

Weight (kDa)

5.2

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	12 - 116	2.2e-14	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	2 cut(s)	199, 315
AclWI	GGATC	3 cut(s)	154, 156, 332
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	87, 314, 325
AgeI	ACCGGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	95, 247
AhlI	ACTAGT	1 cut(s)	293
AluBI	AGCT	3 cut(s)	45, 50, 67
AluI	AGCT	3 cut(s)	45, 50, 67
Alw26I	GTCTC	2 cut(s)	3, 204
AlwI	GGATC	3 cut(s)	154, 156, 332
AoxI	GGCC	2 cut(s)	316, 344
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	341
AvrII	CCTAGG	1 cut(s)	341
BccI	CCATC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcoDI	GTCTC	2 cut(s)	3, 204
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	4 cut(s)	164, 173, 294, 342
BisI	GCNGC	2 cut(s)	200, 316
BlnI	CCTAGG	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	2 cut(s)	201, 317
Bpu1102I	GCTNAGC	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 314, 325
Bse118I	RCCGGY	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	87, 314, 325
BseRI	GAGGAG	3 cut(s)	150, 267, 270
BshFI	GGCC	2 cut(s)	318, 346
BshTI	ACCGGT	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	214
BslI	CCNNNNNNNGG	3 cut(s)	87, 314, 325
BsmAI	GTCTC	2 cut(s)	3, 204
BsmBI	CGTCTC	1 cut(s)	3
BsnI	GGCC	2 cut(s)	318, 346
Bso31I	GGTCTC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	148, 159, 337
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	199, 315
BspANI	GGCC	2 cut(s)	318, 346
BspPI	GGATC	3 cut(s)	154, 156, 332
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	148, 159, 337
BssNAI	GTATAC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	341
Bst1107I	GTATAC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	46, 284, 309, 348
BstKTI	GATC	3 cut(s)	151, 162, 340
BstMAI	GTCTC	2 cut(s)	3, 204
BstMBI	GATC	3 cut(s)	148, 159, 337
BstZ17I	GTATAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	318, 346
Cfr10I	RCCGGY	1 cut(s)	213
CspAI	ACCGGT	1 cut(s)	213
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	5 cut(s)	45, 50, 67, 318, 346
CviKI_1	RGCY	5 cut(s)	45, 50, 67, 318, 346
DdeI	CTNAG	4 cut(s)	46, 284, 309, 348
DpnI	GATC	3 cut(s)	150, 161, 339
DpnII	GATC	3 cut(s)	148, 159, 337
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	1 cut(s)	160
FaiI	YATR	9 cut(s)	6, 40, 63, 117, 153, 158, 182, 305, 358
FatI	CATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	200, 316
Fsp4HI	GCNGC	2 cut(s)	200, 316
FspBI	CTAG	4 cut(s)	164, 173, 294, 342
GluI	GCNGC	2 cut(s)	200, 316
HaeIII	GGCC	2 cut(s)	318, 346
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	40, 124, 219
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	40, 124, 219
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	89, 323
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	36, 110
HpyCH4V	TGCA	4 cut(s)	4, 115, 143, 266
HpyF3I	CTNAG	4 cut(s)	46, 284, 309, 348
HpySE526I	ACGT	2 cut(s)	36, 110
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	148, 159, 337
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	1 cut(s)	227
MaeI	CTAG	4 cut(s)	164, 173, 294, 342
MaeII	ACGT	2 cut(s)	36, 110
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	150, 161, 339
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	3 cut(s)	148, 159, 337
MboII	GAAGA	4 cut(s)	86, 188, 219, 235
MluCI	AATT	1 cut(s)	239
MnlI	CCTC	7 cut(s)	128, 139, 180, 195, 245, 248, 329
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	148, 159, 337
NlaIII	CATG	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	201, 317
PsrI	GAACNNNNNNTAC	4 cut(s)	23, 55, 91, 123
SatI	GCNGC	2 cut(s)	200, 316
Sau3AI	GATC	3 cut(s)	148, 159, 337
SetI	ASST	8 cut(s)	39, 47, 52, 57, 69, 113, 310, 334
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	199, 315
SspMI	CTAG	4 cut(s)	164, 173, 294, 342
StuI	AGGCCT	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	39, 113
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	239
TauI	GCSGC	2 cut(s)	202, 318
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	4 cut(s)	164, 173, 294, 342
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.