Rh4BG003400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000849
Physical Location & Seq
Reverse (-)
639477 .. 657071
17595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG003400.1

Sequence Viewer

Length: 795 bp
ATGGACATGATCAGCATGTTGCCTGTGGAGTGCATCTCCCTCATCATTTCCTTTACATCTCCGCGCGATGCCTGCAGATCATCAGTAGTCTCTCCTGTCTTGAGAATCGCTGGAGATTCTGATTTTGTCTGGGAGAGGTTTCTGCCTCAAGATTATAAGCAAATCATTTCTCAATCCCCGTCATCGTCATCTTTGAACTCCATGTCCAAGAAGGATCTCTACTTTAGTCTTTGCAGTCACCCCATCAACATAAGCAATGGTAACATGATTAATGATATAATGTCTGCCTCTTTCTTTGACTTGTTTGGTCATTTGGGCTTGCTCGGGCAGAGAGGTAAGGAGAAGAAAGACCTTTTCTCACTTTCCTCTCATTTCCACCAACATTTTTGCAGACTTCCATGCTCATTTGCTGTCCTTCTCTCCAATCCTAAAACCCATTCATCAAACAAAACCTTAAAACCCCAATTCGATTCGATTCAATTCTATTCGGATGAGTGCAGCGATGACAAGCGTCACCAGAGCAAAAGTGGAGTCTCTGAAATCGTTCAAGAGATGGGGCAGGACTGCAGAAGGCACTCGTTCAGCCGGTACGGACTTCCGATGATCTCCCCCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGATATCGCCAATTTCAAAGACGACCAGGAATGGGAGATCGTCGAGACCCGGAAAGCTCTTTCCAGAACTTCCGATAATCTCGCTCACCGTGTTTCTATGTTCTGCAATCGTGTGGTGGTGGTGGTAGACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

264

Amino Acids

29.78

Weight (kDa)

7.13

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 623
AccI GTMKAC 1 cut(s) 786
AccII CGCG 2 cut(s) 64, 66
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 624
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 691
AgsI TTSAA 4 cut(s) 196, 479, 548, 676
AjnI CCWGG 1 cut(s) 684
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 1 cut(s) 716
AluI AGCT 1 cut(s) 716
Alw26I GTCTC 3 cut(s) 94, 538, 698
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 2 cut(s) 498, 654
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 66, 626
AsuC2I CCSGG 1 cut(s) 709
AsuHPI GGTGA 3 cut(s) 230, 506, 737
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 1 cut(s) 623
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbvI GCAGC 2 cut(s) 510, 666
BccI CCATC 3 cut(s) 251, 547, 648
BceAI ACGGC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 646, 680
BciT130I CCWGG 1 cut(s) 686
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 3 cut(s) 94, 538, 698
BfmI CTRYAG 2 cut(s) 73, 565
BfoI RGCGCY 1 cut(s) 627
BisI GCNGC 2 cut(s) 499, 655
BlsI GCNGC 2 cut(s) 500, 656
Bme1390I CCNGG 2 cut(s) 686, 709
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 2 cut(s) 686, 709
BmsI GCATC 2 cut(s) 42, 58
BoxI GACNNNNGTC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 121, 132
BpuMI CCSGG 1 cut(s) 709
BsaHI GRCGYC 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 2 cut(s) 496, 645
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 794
BseXI GCAGC 2 cut(s) 510, 666
BsgI GTGCAG 1 cut(s) 517
Bsh1236I CGCG 2 cut(s) 64, 66
BshFI GGCC 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 586, 709
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 3 cut(s) 94, 538, 698
BsnI GGCC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 698
BsoBI CYCGRG 1 cut(s) 323
Bsp143I GATC 5 cut(s) 9, 77, 214, 603, 696
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 633
BspFNI CGCG 2 cut(s) 64, 66
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 2 cut(s) 77, 569
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 1 cut(s) 794
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 5 cut(s) 9, 77, 214, 603, 696
BssNI GRCGYC 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 2 cut(s) 616, 749
BstACI GRCGYC 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 73, 320
BstF5I GGATG 2 cut(s) 496, 645
BstFNI CGCG 2 cut(s) 64, 66
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 2 cut(s) 66, 626
BstKTI GATC 5 cut(s) 12, 80, 217, 606, 699
BstMAI GTCTC 3 cut(s) 94, 538, 698
BstMBI GATC 5 cut(s) 9, 77, 214, 603, 696
BstMWI GCNNNNNNNGC 2 cut(s) 72, 630
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 510
BstSCI CCNGG 2 cut(s) 684, 707
BstSFI CTRYAG 2 cut(s) 73, 565
BstUI CGCG 2 cut(s) 64, 66
BstV1I GCAGC 2 cut(s) 510, 666
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 633
BtgZI GCGATG 2 cut(s) 81, 516
BtsCI GGATG 2 cut(s) 496, 645
Cac8I GCNNGC 2 cut(s) 73, 320
CfoI GCGC 2 cut(s) 66, 626
Cfr10I RCCGGY 1 cut(s) 585
CseI GACGC 1 cut(s) 500
Csp6I GTAC 1 cut(s) 589
CviAII CATG 5 cut(s) 7, 16, 202, 265, 399
CviJI RGCY 4 cut(s) 318, 585, 633, 716
CviKI_1 RGCY 4 cut(s) 318, 585, 633, 716
CviQI GTAC 1 cut(s) 589
DinI GGCGCC 1 cut(s) 625
DpnI GATC 5 cut(s) 11, 79, 216, 605, 698
DpnII GATC 5 cut(s) 9, 77, 214, 603, 696
Eco130I CCWWGG 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 698
Eco32I GATATC 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 649
EgeI GGCGCC 1 cut(s) 625
EheI GGCGCC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 10, 19, 205, 268, 402
FaiI YATR 9 cut(s) 8, 17, 156, 203, 251, 266, 278, 400, 758
FatI CATG 5 cut(s) 6, 15, 201, 264, 398
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 499, 655
FokI GGATG 2 cut(s) 503, 632
Fsp4HI GCNGC 2 cut(s) 499, 655
GlaI GCGC 2 cut(s) 65, 625
GluI GCNGC 2 cut(s) 499, 655
GsuI CTGGAG 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 1 cut(s) 633
HapII CCGG 2 cut(s) 586, 709
HgaI GACGC 1 cut(s) 500
HhaI GCGC 2 cut(s) 66, 626
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 5 cut(s) 10, 19, 205, 268, 402
Hin6I GCGC 2 cut(s) 64, 624
HinP1I GCGC 2 cut(s) 64, 624
HinfI GANTC 5 cut(s) 105, 116, 470, 475, 531
HpaII CCGG 2 cut(s) 586, 709
HphI GGTGA 3 cut(s) 230, 506, 737
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 5 cut(s) 121, 490, 538, 600, 733
Hpy188III TCNNGA 5 cut(s) 100, 149, 548, 703, 723
Hpy8I GTNNAC 1 cut(s) 787
Hpy99I CGWCG 2 cut(s) 632, 704
HpyAV CCTTC 3 cut(s) 205, 425, 564
HpyCH4III ACNGT 2 cut(s) 616, 749
HpyCH4V TGCA 7 cut(s) 33, 75, 234, 390, 498, 567, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 630
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 5 cut(s) 10, 19, 205, 268, 402
HspAI GCGC 2 cut(s) 64, 624
KasI GGCGCC 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 5 cut(s) 9, 77, 214, 603, 696
Lsp1109I GCAGC 2 cut(s) 510, 666
LweI GCATC 2 cut(s) 42, 58
MaeIII GTNAC 3 cut(s) 236, 260, 512
MalI GATC 5 cut(s) 11, 79, 216, 605, 698
MboI GATC 5 cut(s) 9, 77, 214, 603, 696
MboII GAAGA 1 cut(s) 355
MflI RGATCY 1 cut(s) 214
MluCI AATT 3 cut(s) 464, 479, 670
Mly113I GGCGCC 1 cut(s) 624
MlyI GAGTC 1 cut(s) 540
MnlI CCTC 7 cut(s) 50, 129, 156, 298, 326, 376, 644
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 2 cut(s) 270, 455
MspI CCGG 2 cut(s) 586, 709
MspR9I CCNGG 2 cut(s) 686, 709
MvaI CCWGG 1 cut(s) 686
MvnI CGCG 2 cut(s) 64, 66
MwoI GCNNNNNNNGC 2 cut(s) 72, 630
NarI GGCGCC 1 cut(s) 624
NciI CCSGG 1 cut(s) 709
NdeII GATC 5 cut(s) 9, 77, 214, 603, 696
NlaIII CATG 5 cut(s) 10, 19, 205, 268, 402
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 2 cut(s) 236, 512
NspI RCATGY 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 105, 116, 470, 475
PkrI GCNGC 2 cut(s) 500, 656
PleI GAGTC 1 cut(s) 539
PluTI GGCGCC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 539
PshAI GACNNNNGTC 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 625
PstI CTGCAG 2 cut(s) 77, 569
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
SaqAI TTAA 2 cut(s) 270, 455
SatI GCNGC 2 cut(s) 499, 655
Sau3AI GATC 5 cut(s) 9, 77, 214, 603, 696
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 2 cut(s) 686, 709
SetI ASST 5 cut(s) 140, 337, 354, 455, 718
SfaNI GCATC 2 cut(s) 42, 58
SfcI CTRYAG 2 cut(s) 73, 565
SfoI GGCGCC 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 100, 147
SmoI CTYRAG 2 cut(s) 100, 147
Sse9I AATT 3 cut(s) 464, 479, 670
SsiI CCGC 1 cut(s) 62
SspDI GGCGCC 1 cut(s) 623
StyD4I CCNGG 2 cut(s) 684, 707
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 616, 749
TaqI TCGA 3 cut(s) 468, 473, 702
TasI AATT 3 cut(s) 464, 479, 670
TfiI GAWTC 4 cut(s) 105, 116, 470, 475
Tru1I TTAA 2 cut(s) 270, 455
Tru9I TTAA 2 cut(s) 270, 455
TseFI GTSAC 2 cut(s) 236, 512
TseI GCWGC 2 cut(s) 498, 654
Tsp45I GTSAC 2 cut(s) 236, 512
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 1 cut(s) 606
VspI ATTAAT 1 cut(s) 270
XceI RCATGY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.