Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Forward (+)

1202103 .. 1203294

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGGGATTAGAGAGGTTACCAGAAGAGTGCATAGCCCATGTTCTTTCCCTAACCTCCCCTAAAGATGCTTGCCGATCAGCCTTGGTCTCCTCTGCGTTTGGATCCGCCGCTCAATCCCAAGTTGTTTGGGAGAGTTTTTTACCCTCAGACCACCGTGACATCATCTCCCGATCCGTTTCTCCTGTCACCTTTTCCTCTAACAAGGAACTCTACTTCCGTCTCTGCGATTCTCCCATCTTCCTCGACGATGGTAATCTGAGTTTTGCAATAGATAAATTGAGTGGTAAAAAATGTTTGATGCTGGGAGCCAGACGTTTACTCATAGCCTGGGGAGACACTCCAATTTACTGGGAGTGGATTTCTGTGCCTCACTCCAGATTTGCCGAGGTGGCTTATCTGCACTCTGTTTGTTGGCTTGAGATTTATGGTAGATTGGAGATGCGATCCCTGTCTCCAAACACAGCTTATGCTGGATACTTGGTTTACATGTTCTCCGAAGAAGCCACTAATTACGCAGGAACTGGACAGAATTATTATGAAACTTTTCCGGTCAAGCTTTCAGTTAAGTTCTTTGAGAATGATGAAAATCTGATTGAAGCTCGTGACGAAGATGATGCAGAGTTGTTGATATCAACAAGAATGCCTGCTGCATCATTTATGAATAGTAGTGTTGAAAAGCGACAACGCTTTCCGATGGAGAGAGACGATGGCTGGATGGAGATTGAGGTAGGAGAGTTTTATTCTGGCCAAAGTGATGGTGACTATTGCTTGGTGGAGATGGGTGTCAAGGAGATCGAATCAGGGAGTTGGAAGTTTGGGCTTGTTATCCATGGCATTGAGATTCGGCCCATCCAACCGAAACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

290

Amino Acids

32.86

Weight (kDa)

4.81

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 45	1.7e-06	F-box domain
F-box-like	PF12937	4 - 46	3.1e-06	F-box-like
PP2	PF14299	97 - 284	2.2e-47	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	108, 111
AclWI	GGATC	4 cut(s)	99, 112, 168, 441
AcoI	YGGCCR	1 cut(s)	748
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	2 cut(s)	599, 677
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	467, 559, 602
AluI	AGCT	3 cut(s)	467, 559, 602
Alw26I	GTCTC	5 cut(s)	94, 227, 330, 459, 699
AlwI	GGATC	4 cut(s)	99, 112, 168, 441
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	748, 848
ApeKI	GCWGC	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	849
AsuHPI	GGTGA	2 cut(s)	181, 773
BalI	TGGCCA	1 cut(s)	750
BamHI	GGATCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	8 cut(s)	245, 245, 691, 704, 712, 752, 775, 860
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	5 cut(s)	94, 227, 330, 459, 699
BfuI	GTATCC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	2 cut(s)	111, 651
BlsI	GCNGC	2 cut(s)	112, 652
Bme1390I	CCNGG	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	2 cut(s)	106, 310
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	5 cut(s)	58, 291, 432, 607, 662
BmuI	ACTGGG	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	2 cut(s)	255, 588
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	84, 330, 387, 832
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 479, 509
Bse1I	ACTGG	2 cut(s)	356, 529
Bse8I	GATNNNNATC	2 cut(s)	255, 588
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	4 cut(s)	84, 330, 387, 832
BseGI	GGATG	2 cut(s)	723, 852
BseJI	GATNNNNATC	2 cut(s)	255, 588
BseMII	CTCAG	2 cut(s)	162, 251
BseNI	ACTGG	2 cut(s)	356, 529
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	637
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	750, 850
BsiSI	CCGG	1 cut(s)	551
BsmAI	GTCTC	5 cut(s)	94, 227, 330, 459, 699
BsmBI	CGTCTC	2 cut(s)	227, 699
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	750, 850
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	77, 104, 173, 446, 795
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	2 cut(s)	108, 111
BspANI	GGCC	2 cut(s)	750, 850
BspCNI	CTCAG	2 cut(s)	161, 252
BspLI	GGNNCC	2 cut(s)	106, 310
BspPI	GGATC	4 cut(s)	99, 112, 168, 441
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	356, 529
BssECI	CCNNGG	4 cut(s)	84, 330, 387, 832
BssMI	GATC	5 cut(s)	77, 104, 173, 446, 795
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	2 cut(s)	84, 832
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	73, 648
BstDEI	CTNAG	2 cut(s)	148, 260
BstDSI	CCRYGG	1 cut(s)	832
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	723, 852
BstKTI	GATC	5 cut(s)	80, 107, 176, 449, 798
BstMAI	GTCTC	5 cut(s)	94, 227, 330, 459, 699
BstMBI	GATC	5 cut(s)	77, 104, 173, 446, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	2 cut(s)	351, 758
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	750, 850
BtgI	CCRYGG	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	723, 852
Cac8I	GCNNGC	2 cut(s)	73, 648
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	849
CviAII	CATG	3 cut(s)	41, 490, 833
DdeI	CTNAG	2 cut(s)	148, 260
DpnI	GATC	5 cut(s)	79, 106, 175, 448, 797
DpnII	GATC	5 cut(s)	77, 104, 173, 446, 795
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	84, 832
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	633
EcoT14I	CCWWGG	2 cut(s)	84, 832
ErhI	CCWWGG	2 cut(s)	84, 832
Esp3I	CGTCTC	2 cut(s)	227, 699
FaeI	CATG	3 cut(s)	44, 493, 836
FaiI	YATR	9 cut(s)	35, 42, 326, 429, 471, 491, 540, 662, 834
FatI	CATG	3 cut(s)	40, 489, 832
Fnu4HI	GCNGC	2 cut(s)	111, 651
FokI	GGATG	2 cut(s)	730, 839
Fsp4HI	GCNGC	2 cut(s)	111, 651
GluI	GCNGC	2 cut(s)	111, 651
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	750, 850
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	3 cut(s)	44, 493, 836
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	230, 800, 844
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	181, 773
Hpy166II	GTNNAC	2 cut(s)	320, 487
Hpy188I	TCNGA	5 cut(s)	151, 261, 499, 594, 696
Hpy188III	TCNNGA	3 cut(s)	171, 378, 605
Hpy8I	GTNNAC	2 cut(s)	320, 487
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	33, 269, 403, 620, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	148, 260
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	44, 493, 836
Kzo9I	GATC	5 cut(s)	77, 104, 173, 446, 795
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	5 cut(s)	58, 291, 432, 607, 662
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	5 cut(s)	18, 158, 187, 605, 761
MalI	GATC	5 cut(s)	79, 106, 175, 448, 797
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	5 cut(s)	77, 104, 173, 446, 795
MboII	GAAGA	4 cut(s)	38, 232, 512, 623
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	5 cut(s)	278, 345, 511, 532, 868
MluNI	TGGCCA	1 cut(s)	750
MmeI	TCCRAC	1 cut(s)	791
MnlI	CCTC	9 cut(s)	9, 67, 103, 157, 208, 254, 381, 382, 721
Mox20I	TGGCCA	1 cut(s)	750
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	2 cut(s)	567, 871
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	5 cut(s)	77, 104, 173, 446, 795
NlaIII	CATG	3 cut(s)	44, 493, 836
NlaIV	GGNNCC	2 cut(s)	106, 310
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	4 cut(s)	158, 187, 605, 761
NspI	RCATGY	1 cut(s)	493
PciI	ACATGT	1 cut(s)	489
PctI	GAATGC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	3 cut(s)	230, 800, 844
PkrI	GCNGC	2 cut(s)	112, 652
PscI	ACATGT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	106, 310
PspPI	GGNCC	1 cut(s)	849
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	567, 871
SatI	GCNGC	2 cut(s)	111, 651
Sau3AI	GATC	5 cut(s)	77, 104, 173, 446, 795
Sau96I	GGNCC	1 cut(s)	849
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	9 cut(s)	20, 59, 194, 319, 393, 469, 561, 604, 732
SfaNI	GCATC	5 cut(s)	58, 291, 432, 607, 662
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	278, 345, 511, 532, 868
SsiI	CCGC	2 cut(s)	108, 111
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	84, 832
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	246, 798
TasI	AATT	5 cut(s)	278, 345, 511, 532, 868
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	230, 800, 844
Tru1I	TTAA	2 cut(s)	567, 871
Tru9I	TTAA	2 cut(s)	567, 871
TseFI	GTSAC	4 cut(s)	158, 187, 605, 761
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	4 cut(s)	158, 187, 605, 761
TspDTI	ATGAA	3 cut(s)	555, 600, 677
TspGWI	ACGGA	2 cut(s)	166, 209
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.