Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

645751 .. 647426

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGAACATGATCAGCATGCTGCCTGTGGAGTGCATCTCCCACATCATTTCACTAACATCCCCTCGCGATGCCTGCAGATCATCTCTAGTCTCTTCTGTCGTCAGAGAAGCTGCGGATTCGGATTTTGTATGGAAAAGCTTTTTGCCTCAAGATATTAAGCAAATCATTTCTAAATCCTTGTTGCCATCGCCATCATCCTTGAATTCCATCTCTATGAAGGATCTCTACTTCCATCTTCGAATTCACCATCAACACATAATTTTAGATGGTAACATGAGCTTTGCACTAGAAGAGAAGAGTGGAAAGAAATGTTATATGATAGGGGCAAGAGGGCTTTCAATTGCAGGGGAAGAAGACAAACTCGGTTATTGGCAATGGACAACCGTACCAGCATCTAGGTTTTGTGAAGTGGCTGAGCTGAAAAATGTATTGGGGCTTGACATCAAGGCACACATCAAAACTAGAATGTTGTCTCCGGGTGCAACCTATGCGGCTTACTTTGTCTATCAGCTCTTAGGATGCAGATTTGGGTTTGCACAAACGCCAATTGAGTTTTGTGTCACTTGGGAACAAAGCCGAGTAGAAGCGTCTTACCATGAGGTATGCCTAGAACGTGTGGTTCTAGACCCGTCTGCAGCGTCTCCACGAGCTCAATATAGAAGAGATGGGTGGATGGAGGTGGAGATGGGTGAGTTCTTCATCAAAGAAGGAGATAATGCTACTGTGGAGTGTAGTGTGAGGGAAGTTAATGGCACTAAGAGCGGCCTCCTTGTGGAAGGCATTGAGATTAGGCCTAAACTAGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

270

Amino Acids

30.4

Weight (kDa)

6.19

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	6 - 48	1.9e-06	F-box-like
PP2	PF14299	103 - 266	4.8e-42	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	765
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	116, 494, 765
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	205, 243
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	2 cut(s)	205, 342
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	6 cut(s)	113, 141, 282, 421, 514, 653
AluI	AGCT	6 cut(s)	113, 141, 282, 421, 514, 653
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	3 cut(s)	97, 480, 648
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	766, 794
ApeKI	GCWGC	3 cut(s)	22, 113, 638
ApoI	RAATTY	2 cut(s)	205, 243
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	239, 704
AsuII	TTCGAA	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanII	GRGCYC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	3 cut(s)	9, 100, 650
BccI	CCATC	9 cut(s)	196, 202, 218, 243, 258, 263, 662, 670, 682
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	97, 480, 648
BfaI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
BfmI	CTRYAG	2 cut(s)	76, 636
BisI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	5 cut(s)	24, 115, 496, 640, 767
Bme1390I	CCNGG	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	4 cut(s)	45, 61, 404, 512
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu1102I	GCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse3DI	GCAATG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	59, 197, 527, 681
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	9, 100, 650
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	768, 796
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	3 cut(s)	97, 480, 648
BsmBI	CGTCTC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	768, 796
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	12, 80, 223
Bsp1720I	GCTNAGC	1 cut(s)	417
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	3 cut(s)	116, 494, 765
BspANI	GGCC	2 cut(s)	768, 796
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	69
BspMAI	CTGCAG	2 cut(s)	80, 640
BspPI	GGATC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	383
BssMI	GATC	3 cut(s)	12, 80, 223
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	2 cut(s)	388, 727
Bst6I	CTCTTC	4 cut(s)	100, 288, 293, 658
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	20, 76
BstDEI	CTNAG	3 cut(s)	417, 517, 759
BstF5I	GGATG	4 cut(s)	59, 197, 527, 681
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	3 cut(s)	15, 83, 226
BstMAI	GTCTC	3 cut(s)	97, 480, 648
BstMBI	GATC	3 cut(s)	12, 80, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 491, 762
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	2 cut(s)	76, 636
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	9, 100, 650
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	768, 796
BtgZI	GCGATG	2 cut(s)	84, 174
BtsCI	GGATG	4 cut(s)	59, 197, 527, 681
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	20, 76
CseI	GACGC	2 cut(s)	579, 630
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	4 cut(s)	10, 19, 277, 599
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	3 cut(s)	417, 517, 759
DpnI	GATC	3 cut(s)	14, 82, 225
DpnII	GATC	3 cut(s)	12, 80, 223
Eam1104I	CTCTTC	4 cut(s)	100, 288, 293, 658
EarI	CTCTTC	4 cut(s)	100, 288, 293, 658
Ecl136II	GAGCTC	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	653
EcoRI	GAATTC	2 cut(s)	205, 243
EcoT38I	GRGCYC	1 cut(s)	655
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	4 cut(s)	13, 22, 280, 602
FatI	CATG	4 cut(s)	9, 18, 276, 598
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
FokI	GGATG	4 cut(s)	46, 184, 534, 688
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
FspBI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
GluI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
HaeIII	GGCC	2 cut(s)	768, 796
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	2 cut(s)	579, 630
Hin1II	CATG	4 cut(s)	13, 22, 280, 602
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	239, 704
Hpy188I	TCNGA	2 cut(s)	107, 124
Hpy188III	TCNNGA	3 cut(s)	68, 152, 626
HpyAV	CCTTC	3 cut(s)	214, 704, 773
HpyCH4III	ACNGT	2 cut(s)	388, 727
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	8 cut(s)	36, 78, 287, 347, 485, 525, 539, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 491, 762
HpyF3I	CTNAG	3 cut(s)	417, 517, 759
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	4 cut(s)	13, 22, 280, 602
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 80, 223
LpnPI	CCDG	5 cut(s)	39, 88, 333, 405, 492
Lsp1109I	GCAGC	3 cut(s)	9, 100, 650
LweI	GCATC	4 cut(s)	45, 61, 404, 512
MaeI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	272, 562
MalI	GATC	3 cut(s)	14, 82, 225
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	3 cut(s)	12, 80, 223
MboII	GAAGA	9 cut(s)	16, 87, 230, 305, 310, 365, 368, 675, 691
MfeI	CAATTG	2 cut(s)	342, 549
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	5 cut(s)	205, 243, 261, 342, 549
MnlI	CCTC	7 cut(s)	75, 159, 326, 595, 673, 735, 779
MseI	TTAA	2 cut(s)	159, 750
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	2 cut(s)	342, 549
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	75, 491, 762
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	12, 80, 223
NlaIII	CATG	4 cut(s)	13, 22, 280, 602
NmeAIII	GCCGAG	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	562
NruI	TCGCGA	1 cut(s)	69
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	24, 115, 496, 640, 767
Psp124BI	GAGCTC	1 cut(s)	655
PstI	CTGCAG	2 cut(s)	80, 640
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	2 cut(s)	159, 750
SatI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
Sau3AI	GATC	3 cut(s)	12, 80, 223
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	4 cut(s)	45, 61, 404, 512
SfcI	CTRYAG	2 cut(s)	76, 636
SfuI	TTCGAA	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	5 cut(s)	205, 243, 261, 342, 549
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	3 cut(s)	116, 494, 765
SspMI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
SstI	GAGCTC	1 cut(s)	655
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	2 cut(s)	388, 727
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	241
TasI	AATT	5 cut(s)	205, 243, 261, 342, 549
TauI	GCSGC	2 cut(s)	497, 768
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	159, 750
Tru9I	TTAA	2 cut(s)	159, 750
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	3 cut(s)	22, 113, 638
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	17, 233, 691
XapI	RAATTY	2 cut(s)	205, 243
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.