RLG00000010246

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000849
Physical Location & Seq
Forward (+)
64641739 .. 64642936
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010246

Sequence Viewer

Length: 879 bp
ATGGTGGGATTAGAGAGATTACCAGAAGAGTGCATAGCCCATGTTCTTTCCCTAACCTCCCCTAAAGATGCTTGCCGATCAGCCTTGGTCTCCTCTGCGTTTGGATCCGCCACTCAATCCCAAGTTGTTTGGGAGCGTTTTTTACCCTCAGACCACCGTGACATCATCTCCCGATCCGTTTCTCCCATCACCTTTTCCTCTAACAAGGAACTCTACTTCCGTCTCTGCGATTCTCCCATCTTCCTCGACGATGGTAATCTGAGTTTTGCAATAGATAAATTGAGTGGCAAAAAATGTTTGATGCTGGGAGCCAGACGTTTACTCATAGCCTGGGGAGACACTCCAATTTACTGGGAGTGGATTTCTATGCCTCACTCCAGATTTGCCGAGGTGGCTTATCTGCACTCTGTTTGTTGGCTTGAGATTTATGGCAGATTGGAGATGCGATCCGTATCTCCAAACACAGCTTATGCTGGATACTTGGTTTACATGTTCTCCGAGGAAGCCACTAATTACGCAGGAACCGGACAGAATTATTATGAAACTTTTCCGGTCAAGCTTTCAGTTAAGTTCTTTGAGAATGATGAAAATTTGATTGAAGCTCGTGACGATGATGATGCAGAGTTGTTGAAATCAACAAGAATGCCTGCTGCTGCTGTATCATCTATGAATAGTAGTGTTGAAAAGCGACAACGCTTTCCGATGGAGAGAGACGATGGCTGGATGGAGATTGAGATAGGAGAGTTTCATTCTGGCCAAAGTGATGATGACTATTGCTTGGTGGAGATGGGTGTCAAGGAGATCGAATCAGGGAGTTGGAAGTTTGGGCTTGTTATCCATGGCATTGAGATTCGGCCTATCCAACCGAAACCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

293

Amino Acids

33.15

Weight (kDa)

4.92

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 3.2e-06 F-box domain
F-box-like PF12937 4 - 47 2.4e-06 F-box-like
PP2 PF14299 97 - 286 1.7e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AclWI GGATC 4 cut(s) 99, 112, 168, 441
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 3 cut(s) 599, 631, 683
AjnI CCWGG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 3 cut(s) 467, 559, 602
AluI AGCT 3 cut(s) 467, 559, 602
Alw26I GTCTC 4 cut(s) 94, 227, 330, 705
AlwI GGATC 4 cut(s) 99, 112, 168, 441
AoxI GGCC 2 cut(s) 754, 854
ApeKI GCWGC 2 cut(s) 650, 653
ApoI RAATTY 1 cut(s) 589
Asp700I GAANNNNTTC 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 181
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 603
BbvI GCAGC 2 cut(s) 637, 640
BccI CCATC 7 cut(s) 194, 245, 245, 697, 710, 718, 781
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 331
BciVI GTATCC 1 cut(s) 470
BcoDI GTCTC 4 cut(s) 94, 227, 330, 705
BfuI GTATCC 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 2 cut(s) 651, 654
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 3 cut(s) 106, 310, 523
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 4 cut(s) 58, 291, 432, 607
BmuI ACTGGG 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 255, 451
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 5 cut(s) 84, 330, 387, 498, 838
BsaWI WCCGGW 2 cut(s) 524, 550
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 479, 509
Bse1I ACTGG 1 cut(s) 356
Bse8I GATNNNNATC 2 cut(s) 255, 451
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 5 cut(s) 84, 330, 387, 498, 838
BseGI GGATG 1 cut(s) 729
BseJI GATNNNNATC 2 cut(s) 255, 451
BseMII CTCAG 2 cut(s) 162, 251
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 637, 640
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 2 cut(s) 756, 856
BsiSI CCGG 2 cut(s) 525, 551
BsmAI GTCTC 4 cut(s) 94, 227, 330, 705
BsmBI CGTCTC 2 cut(s) 227, 705
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 2 cut(s) 756, 856
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 5 cut(s) 77, 104, 173, 446, 801
Bsp19I CCATGG 1 cut(s) 838
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 756, 856
BspCNI CTCAG 2 cut(s) 161, 252
BspLI GGNNCC 3 cut(s) 106, 310, 523
BspPI GGATC 4 cut(s) 99, 112, 168, 441
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 84, 330, 387, 498, 838
BssMI GATC 5 cut(s) 77, 104, 173, 446, 801
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 2 cut(s) 84, 838
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 73, 648
BstDEI CTNAG 2 cut(s) 148, 260
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 1 cut(s) 729
BstKTI GATC 5 cut(s) 80, 107, 176, 449, 804
BstMAI GTCTC 4 cut(s) 94, 227, 330, 705
BstMBI GATC 5 cut(s) 77, 104, 173, 446, 801
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 637, 640
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 1 cut(s) 104
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 756, 856
BtgI CCRYGG 1 cut(s) 838
BtsCI GGATG 1 cut(s) 729
Cac8I GCNNGC 2 cut(s) 73, 648
CviAII CATG 3 cut(s) 41, 490, 839
DdeI CTNAG 2 cut(s) 148, 260
DpnI GATC 5 cut(s) 79, 106, 175, 448, 803
DpnII GATC 5 cut(s) 77, 104, 173, 446, 801
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 84, 838
Eco31I GGTCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 84, 838
ErhI CCWWGG 2 cut(s) 84, 838
Esp3I CGTCTC 2 cut(s) 227, 705
FaeI CATG 3 cut(s) 44, 493, 842
FatI CATG 3 cut(s) 40, 489, 838
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 2 cut(s) 651, 654
GluI GCNGC 2 cut(s) 651, 654
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 2 cut(s) 756, 856
HapII CCGG 2 cut(s) 525, 551
Hin1II CATG 3 cut(s) 44, 493, 842
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 3 cut(s) 230, 806, 850
HpaII CCGG 2 cut(s) 525, 551
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 320, 487
Hpy188I TCNGA 4 cut(s) 151, 261, 499, 702
Hpy188III TCNNGA 3 cut(s) 171, 378, 605
Hpy8I GTNNAC 2 cut(s) 320, 487
Hpy99I CGWCG 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 33, 269, 403, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 148, 260
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 3 cut(s) 44, 493, 842
Kzo9I GATC 5 cut(s) 77, 104, 173, 446, 801
LmnI GCTCC 2 cut(s) 133, 308
Lsp1109I GCAGC 2 cut(s) 637, 640
LweI GCATC 4 cut(s) 58, 291, 432, 607
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 158, 605
MalI GATC 5 cut(s) 79, 106, 175, 448, 803
MboI GATC 5 cut(s) 77, 104, 173, 446, 801
MboII GAAGA 2 cut(s) 38, 232
MflI RGATCY 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 6 cut(s) 278, 345, 511, 532, 589, 874
MluNI TGGCCA 1 cut(s) 756
MmeI TCCRAC 1 cut(s) 797
MnlI CCTC 8 cut(s) 67, 103, 157, 208, 254, 381, 382, 493
Mox20I TGGCCA 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 756
MseI TTAA 2 cut(s) 567, 877
Msp20I TGGCCA 1 cut(s) 756
MspI CCGG 2 cut(s) 525, 551
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 648
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 1 cut(s) 838
NdeII GATC 5 cut(s) 77, 104, 173, 446, 801
NlaIII CATG 3 cut(s) 44, 493, 842
NlaIV GGNNCC 3 cut(s) 106, 310, 523
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 158, 605
NspI RCATGY 1 cut(s) 493
PciI ACATGT 1 cut(s) 489
PctI GAATGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 230, 806, 850
PkrI GCNGC 2 cut(s) 652, 655
PscI ACATGT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 106, 310, 523
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 567, 877
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 5 cut(s) 77, 104, 173, 446, 801
ScrFI CCNGG 1 cut(s) 331
SetI ASST 7 cut(s) 59, 194, 319, 393, 469, 561, 604
SfaNI GCATC 4 cut(s) 58, 291, 432, 607
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 6 cut(s) 278, 345, 511, 532, 589, 874
SsiI CCGC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 84, 838
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 246, 804
TasI AATT 6 cut(s) 278, 345, 511, 532, 589, 874
TfiI GAWTC 3 cut(s) 230, 806, 850
Tru1I TTAA 2 cut(s) 567, 877
Tru9I TTAA 2 cut(s) 567, 877
TseFI GTSAC 2 cut(s) 158, 605
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 2 cut(s) 158, 605
TspDTI ATGAA 4 cut(s) 555, 600, 683, 737
TspGWI ACGGA 3 cut(s) 166, 209, 439
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.