Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

346032 .. 347770

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTGGGATTAGAAAAATTACCAGAAGAGTGCATACCCTATGTTCTTTCCCTAACCTCCCCAAAAGATGCTTGCCGATCAGCCTTGGTCTCCTCTGCGTTTGGATCCGCCGTCCATTCCCAAGTTGTTTGGGAGCGTTTTTTACCCTCCGACCACCGTGACATCATTTCCCGATCCGTTTCTCCCATCACTTTTTCCTCTAAGAAGGAACTCTACTTCCGTCTCTGCGATTCTCCCATCTTCCTCGACGATGGTAATCTGAGTTTTGCAATAGACAAATTGAGTGGCAAAAAATGTTTGATGCTGGGAGCCAGACGTTTGCTGATAGCCTGGGGAGACACTCCAACATACTGGGACTGGATTTCTGTGCCTCATTCTAGATTTGGCGAGGTAGCTTATCTACGCTCTGTTTGTTGGCTTGAGATTTATGGCAGAATGGAGATGCGATCCCTGTCTCCAAACACAGCTTACGCTGGATACTTGGTTTACATGTTTTCCGAAGAAGCCACTGATTACGTAGGAACTGGACGGAATTACTATGAAACATTTCCTGTCAAGCTTTCAGTTAAGTTTTTCGGGAATGAAGAAACTTTGATTGAAGCTCATGACGAAAAGGATGCAGAGTTGTTGCTATCAACAAGAAGGACTACTGCTGATGCTGCAGCATCTATGGATTATAGTGTTGGAAATAAGCGACAGCGTTTTCCAATGGAGAGAAACGATGGCTGGATGGAGATTGAGATAGGAGAGTTTTATTGTGGCCAAAGTGATAATGACAATTGCTTGGTGGAGGTGGGTGTCAAGGAGATTGAATCAGGGAGTTGGAAGTTTGGTCTTGTTATCCATGGCATTGAGATTAGGCCGATCCAGCCGAAACCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

295

Amino Acids

33.36

Weight (kDa)

5.2

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 45	8.6e-06	F-box domain
PP2	PF14299	97 - 288	1.5e-47	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	5 cut(s)	99, 112, 168, 441, 859
AcoI	YGGCCR	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	2 cut(s)	599, 812
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	4 cut(s)	395, 467, 559, 602
AluI	AGCT	4 cut(s)	395, 467, 559, 602
Alw26I	GTCTC	4 cut(s)	94, 227, 330, 459
AlwI	GGATC	5 cut(s)	99, 112, 168, 441, 859
AoxI	GGCC	2 cut(s)	760, 860
ApeKI	GCWGC	2 cut(s)	659, 662
Asp700I	GAANNNNTTC	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	762
BamHI	GGATCC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	4 cut(s)	18, 50, 197, 229
BbvI	GCAGC	2 cut(s)	646, 674
BccI	CCATC	5 cut(s)	194, 245, 245, 716, 724
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	4 cut(s)	94, 227, 330, 459
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	2 cut(s)	660, 663
BlsI	GCNGC	2 cut(s)	661, 664
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	106, 310
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	6 cut(s)	58, 291, 432, 607, 646, 674
BmuI	ACTGGG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	84, 330, 844
Bse1I	ACTGG	3 cut(s)	356, 362, 529
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	84, 330, 844
BseGI	GGATG	2 cut(s)	622, 735
BseJI	GATNNNNATC	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	3 cut(s)	356, 362, 529
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	646, 674
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	2 cut(s)	762, 862
BslFI	GGGAC	1 cut(s)	368
BsmAI	GTCTC	4 cut(s)	94, 227, 330, 459
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	762, 862
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	77, 104, 173, 446, 864
Bsp19I	CCATGG	1 cut(s)	844
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	762, 862
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	106, 310
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	5 cut(s)	99, 112, 168, 441, 859
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	356, 362, 529
BssECI	CCNNGG	3 cut(s)	84, 330, 844
BssMI	GATC	5 cut(s)	77, 104, 173, 446, 864
BssT1I	CCWWGG	2 cut(s)	84, 844
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	201, 260
BstDSI	CCRYGG	1 cut(s)	844
BstF5I	GGATG	2 cut(s)	622, 735
BstKTI	GATC	5 cut(s)	80, 107, 176, 449, 867
BstMAI	GTCTC	4 cut(s)	94, 227, 330, 459
BstMBI	GATC	5 cut(s)	77, 104, 173, 446, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 868
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	660
BstSNI	TACGTA	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	646, 674
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	762, 862
BtgI	CCRYGG	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	622, 735
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	604
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	3 cut(s)	490, 605, 845
DdeI	CTNAG	2 cut(s)	201, 260
DpnI	GATC	5 cut(s)	79, 106, 175, 448, 866
DpnII	GATC	5 cut(s)	77, 104, 173, 446, 864
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	84, 844
Eco31I	GGTCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	2 cut(s)	84, 844
ErhI	CCWWGG	2 cut(s)	84, 844
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	493, 608, 848
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	489, 604, 844
Fnu4HI	GCNGC	2 cut(s)	660, 663
FokI	GGATG	2 cut(s)	629, 742
Fsp4HI	GCNGC	2 cut(s)	660, 663
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	660, 663
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	762, 862
Hin1II	CATG	3 cut(s)	493, 608, 848
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	2 cut(s)	230, 812
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	151, 261, 499
Hpy188III	TCNNGA	4 cut(s)	171, 378, 577, 605
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	199, 636
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	316, 516
HpyCH4V	TGCA	4 cut(s)	33, 269, 620, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 868
HpyF3I	CTNAG	2 cut(s)	201, 260
HpySE526I	ACGT	2 cut(s)	316, 516
Hsp92II	CATG	3 cut(s)	493, 608, 848
Kzo9I	GATC	5 cut(s)	77, 104, 173, 446, 864
LmnI	GCTCC	2 cut(s)	133, 308
Lsp1109I	GCAGC	2 cut(s)	646, 674
LweI	GCATC	6 cut(s)	58, 291, 432, 607, 646, 674
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	316, 516
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	79, 106, 175, 448, 866
MboI	GATC	5 cut(s)	77, 104, 173, 446, 864
MboII	GAAGA	4 cut(s)	38, 232, 512, 596
MfeI	CAATTG	1 cut(s)	778
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	4 cut(s)	17, 278, 532, 778
MluNI	TGGCCA	1 cut(s)	762
MmeI	TCCRAC	4 cut(s)	174, 368, 664, 803
MnlI	CCTC	8 cut(s)	67, 103, 157, 208, 254, 381, 382, 784
Mox20I	TGGCCA	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	762
MspR9I	CCNGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	659, 868
NcoI	CCATGG	1 cut(s)	844
NdeII	GATC	5 cut(s)	77, 104, 173, 446, 864
NlaIII	CATG	3 cut(s)	493, 608, 848
NlaIV	GGNNCC	2 cut(s)	106, 310
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	493
PagI	TCATGA	1 cut(s)	604
PciI	ACATGT	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	230, 812
PkrI	GCNGC	2 cut(s)	661, 664
Ppu21I	YACGTR	1 cut(s)	517
PscI	ACATGT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	106, 310
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	2 cut(s)	660, 663
Sau3AI	GATC	5 cut(s)	77, 104, 173, 446, 864
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	9 cut(s)	59, 319, 393, 397, 469, 519, 561, 604, 795
SfaNI	GCATC	6 cut(s)	58, 291, 432, 607, 646, 674
SfcI	CTRYAG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SnaBI	TACGTA	1 cut(s)	517
Sse9I	AATT	4 cut(s)	17, 278, 532, 778
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	84, 844
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	319, 519
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	17, 278, 532, 778
TfiI	GAWTC	2 cut(s)	230, 812
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	659, 662
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	555, 597
TspGWI	ACGGA	3 cut(s)	166, 209, 544
TspRI	CASTG	1 cut(s)	514
XbaI	TCTAGA	1 cut(s)	377
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.