Rmu_co8351707.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8351707.1
OG0000849
Physical Location & Seq
Forward (+)
1 .. 727
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8351707.1_g000001.1.cds

Sequence Viewer

Length: 422 bp
catatgtgaatgacaggttctccgaagtggctgagctcagatttgtatggtggcttgagattaagggaaacatagacactaaaattttgtccccccgaacagcctacgcagcttaccttgtatatcagtgtccagaagaatcgcaatgggggtttgagggaatgcctattacggtgcgtgtcaccaatgaacaaaatgaagttgtagctgagcatgatgtgttcctagcagacccgccagaagacatgcctccacaagctcgaagcagaggagatggatggatggagattgagttgggtgaaattttcaaccaagaagatgatgcaactgtggagtttcgtctgagggaaactgagagtggcgagcctaagggcggcctcattgtggaaggtattgagcttaggcctaaactatatatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

139

Amino Acids

16.02

Weight (kDa)

4.35

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 235, 374
AcsI RAATTY 2 cut(s) 83, 302
AfiI CCNNNNNNNGG 2 cut(s) 373, 384
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 5 cut(s) 36, 112, 208, 259, 399
AluI AGCT 5 cut(s) 36, 112, 208, 259, 399
Alw21I GWGCWC 1 cut(s) 38
AoxI GGCC 2 cut(s) 375, 403
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 83, 302
AsuHPI GGTGA 2 cut(s) 174, 310
AxyI CCTNAGG 1 cut(s) 368
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 268, 272, 276
BfaI CTAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 110, 375
BlpI GCTNAGC 2 cut(s) 32, 209
BlsI GCNGC 2 cut(s) 111, 376
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 400
Bpu1102I GCTNAGC 2 cut(s) 32, 209
BpuEI CTTGAG 1 cut(s) 76
BsaXI ACNNNNNCTCC 3 cut(s) 34, 277, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 384
Bse21I CCTNAGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 151
BseGI GGATG 2 cut(s) 283, 287
BseLI CCNNNNNNNGG 2 cut(s) 373, 384
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 5 cut(s) 23, 51, 200, 334, 344
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 377, 405
BsiHKAI GWGCWC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 373, 384
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 377, 405
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1720I GCTNAGC 2 cut(s) 32, 209
BspACI CCGC 2 cut(s) 235, 374
BspANI GGCC 2 cut(s) 377, 405
BspCNI CTCAG 5 cut(s) 24, 50, 201, 335, 345
BsrDI GCAATG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 174, 330
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 7 cut(s) 32, 37, 209, 343, 353, 368, 400
BstF5I GGATG 2 cut(s) 283, 287
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 368
BsuRI GGCC 2 cut(s) 377, 405
BtsCI GGATG 2 cut(s) 283, 287
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 364
CviAII CATG 2 cut(s) 214, 246
DdeI CTNAG 7 cut(s) 32, 37, 209, 343, 353, 368, 400
Ecl136II GAGCTC 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 217, 249
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 213, 245
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 110, 375
FokI GGATG 2 cut(s) 290, 294
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 110, 375
FspBI CTAG 1 cut(s) 226
GluI GCNGC 2 cut(s) 110, 375
HaeIII GGCC 2 cut(s) 377, 405
Hin1II CATG 2 cut(s) 217, 249
HinfI GANTC 1 cut(s) 139
HphI GGTGA 2 cut(s) 174, 310
Hpy188I TCNGA 3 cut(s) 24, 40, 344
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 174, 330
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 7 cut(s) 32, 37, 209, 343, 353, 368, 400
Hsp92II CATG 2 cut(s) 217, 249
LpnPI CCDG 2 cut(s) 146, 251
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 180
MboII GAAGA 3 cut(s) 148, 253, 328
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 83, 302
MnlI CCTC 5 cut(s) 150, 260, 262, 338, 388
MseI TTAA 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 3
NlaIII CATG 2 cut(s) 217, 249
NmuCI GTSAC 1 cut(s) 180
NspI RCATGY 1 cut(s) 249
PceI AGGCCT 1 cut(s) 405
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 111, 376
Psp124BI GAGCTC 1 cut(s) 38
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 110, 375
SduI GDGCHC 1 cut(s) 38
SetI ASST 8 cut(s) 19, 38, 114, 119, 210, 261, 393, 401
SfaNI GCATC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 83, 302
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 2 cut(s) 235, 374
SspMI CTAG 1 cut(s) 226
SstI GAGCTC 1 cut(s) 38
StuI AGGCCT 1 cut(s) 405
TaaI ACNGT 2 cut(s) 174, 330
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 83, 302
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 203, 212
TspRI CASTG 1 cut(s) 133
XapI RAATTY 2 cut(s) 83, 302
XceI RCATGY 1 cut(s) 249
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.