FvH4_4g03690

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000849
Physical Location & Seq
Reverse (-)
3269168 .. 3270686
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03690.t1

Sequence Viewer

Length: 765 bp
ATGAAGAGGCTGCCTGTGGAATGCGTCTCCCACATCCTATCCTTGACGTCACCTCGTGATGCCTGCAGATCATCTGCTGTGTCTTGTCTCTTCAGGAATGCTGCCGATTCTGATTTTGTCTGGGAGAAGCTTCTTCCTTCCGAATTTAAGCGTATCATTTCCGAGTCTTCATCCTCCTCGTCTTTGATTTCCATGCCCAGGAAGGCTCTCTACTTCCATCTCTGCACTCACCCCATCATCATAGGCGATGGCCACACGAGCTTTGCACTAGATAAGCAGAGCGGCAAGATATGTTATATGGTAGGCGCAAGAGGGCTTGTAATTGCATGGGCGGATACACCCGCTTACTGGCAATGGATGACTCTACCACACTCCAGGTTCTCTGAAGTGGCTAGGCTCAAACTTGTATGGTGGCTTGACATCAAGGCTTGCATATCGACTAGCAACTTATCCCCAGGAACAATCTATACAGCTTACCTTGTGTATCAGCTCTCAGAAGTAAGATCGGGGTTGGCGAGAACACCTCTTGTGTTGCGCATCAGTTATCGACAACGTACAGTTGTGAAGCTGCACAGAGTGATCCTAGACCCTATGCCTCAGCGAGCTCGACACAGAGGAGATGGGTGGATGGAGATTGAGATGGGTCAATTCTTCAATGAACAAGGAAATTATCATGATGTTGTAGAGTGCAGTATTACAGAAGTTAGTAACCTAAAGAGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTATACATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

255

Amino Acids

28.84

Weight (kDa)

8.98

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 44 1.7e-07 F-box-like
F-box PF00646 3 - 42 9e-06 F-box domain
PP2 PF14299 96 - 251 4.2e-45 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc16I TGCGCA 1 cut(s) 536
AccBSI CCGCTC 2 cut(s) 282, 720
AciI CCGC 4 cut(s) 282, 332, 342, 720
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 2 cut(s) 76, 405
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 2 cut(s) 56, 577
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 3 cut(s) 198, 348, 730
AgsI TTSAA 1 cut(s) 655
AjnI CCWGG 3 cut(s) 197, 374, 454
AluBI AGCT 7 cut(s) 130, 261, 473, 490, 568, 605, 745
AluI AGCT 7 cut(s) 130, 261, 473, 490, 568, 605, 745
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 2 cut(s) 31, 92
AlwI GGATC 1 cut(s) 574
AoxI GGCC 3 cut(s) 250, 721, 749
ApeKI GCWGC 3 cut(s) 10, 101, 568
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 308, 537
AsuHPI GGTGA 2 cut(s) 42, 221
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 607
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BauI CACGAG 2 cut(s) 54, 256
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 607
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 88, 555
BccI CCATC 6 cut(s) 225, 242, 242, 614, 622, 634
BciT130I CCWGG 3 cut(s) 199, 376, 456
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 31, 92
BfaI CTAG 4 cut(s) 269, 393, 441, 584
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 5 cut(s) 11, 102, 283, 569, 721
BlsI GCNGC 5 cut(s) 12, 103, 284, 570, 722
Bme1390I CCNGG 3 cut(s) 199, 376, 456
BmrFI CCNGG 3 cut(s) 199, 376, 456
BmsI GCATC 2 cut(s) 49, 546
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 508, 540
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 2 cut(s) 597, 746
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 197, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 348, 730
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 3 cut(s) 199, 376, 456
BseDI CCNNGG 2 cut(s) 197, 454
BseGI GGATG 4 cut(s) 33, 170, 363, 633
BseLI CCNNNNNNNGG 3 cut(s) 198, 348, 730
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 507, 611
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 166, 630
BseXI GCAGC 2 cut(s) 88, 555
BsgI GTGCAG 3 cut(s) 208, 554, 709
BshFI GGCC 3 cut(s) 252, 723, 751
BsiHKAI GWGCWC 1 cut(s) 607
BslI CCNNNNNNNGG 3 cut(s) 198, 348, 730
BsmAI GTCTC 2 cut(s) 31, 92
BsmBI CGTCTC 1 cut(s) 31
BsmI GAATGC 2 cut(s) 26, 103
BsnI GGCC 3 cut(s) 252, 723, 751
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 3 cut(s) 68, 503, 579
BspACI CCGC 4 cut(s) 282, 332, 342, 720
BspANI GGCC 3 cut(s) 252, 723, 751
BspCNI CTCAG 2 cut(s) 506, 610
BspHI TCATGA 1 cut(s) 673
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 574
BsrBI CCGCTC 2 cut(s) 282, 720
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 197, 454
BssMI GATC 3 cut(s) 68, 503, 579
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 2 cut(s) 54, 256
Bst2BI CACGAG 2 cut(s) 54, 256
Bst2UI CCWGG 3 cut(s) 199, 376, 456
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 64, 430, 603
BstDEI CTNAG 3 cut(s) 493, 597, 746
BstF5I GGATG 4 cut(s) 33, 170, 363, 633
BstHHI GCGC 2 cut(s) 308, 537
BstKTI GATC 3 cut(s) 71, 506, 582
BstMAI GTCTC 2 cut(s) 31, 92
BstMBI GATC 3 cut(s) 68, 503, 579
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 3 cut(s) 199, 376, 456
BstSCI CCNGG 3 cut(s) 197, 374, 454
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 88, 555
BstV2I GAAGAC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 3 cut(s) 252, 723, 751
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 4 cut(s) 33, 170, 363, 633
Cac8I GCNNGC 3 cut(s) 64, 430, 603
CciI TCATGA 1 cut(s) 673
CfoI GCGC 2 cut(s) 308, 537
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 555
CviAII CATG 3 cut(s) 193, 327, 674
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 3 cut(s) 493, 597, 746
DpnI GATC 3 cut(s) 70, 505, 581
DpnII GATC 3 cut(s) 68, 503, 579
DraIII CACNNNGTG 2 cut(s) 56, 577
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 605
Eco147I AGGCCT 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 2 cut(s) 76, 405
EcoICRI GAGCTC 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 197, 374, 454
EcoT38I GRGCYC 1 cut(s) 607
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 3 cut(s) 196, 330, 677
FatI CATG 3 cut(s) 192, 326, 673
FauI CCCGC 1 cut(s) 349
FauNDI CATATG 1 cut(s) 759
Fnu4HI GCNGC 5 cut(s) 11, 102, 283, 569, 721
FokI GGATG 4 cut(s) 20, 157, 370, 640
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 5 cut(s) 11, 102, 283, 569, 721
FspBI CTAG 4 cut(s) 269, 393, 441, 584
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 2 cut(s) 307, 536
GluI GCNGC 5 cut(s) 11, 102, 283, 569, 721
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 3 cut(s) 252, 723, 751
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 308, 537
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 196, 330, 677
Hin6I GCGC 2 cut(s) 306, 535
HinP1I GCGC 2 cut(s) 306, 535
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 107, 164, 361
HphI GGTGA 2 cut(s) 42, 221
Hpy188I TCNGA 5 cut(s) 112, 142, 163, 385, 496
Hpy188III TCNNGA 3 cut(s) 56, 94, 674
HpyAV CCTTC 3 cut(s) 147, 196, 728
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 2 cut(s) 47, 553
HpyCH4V TGCA 7 cut(s) 66, 225, 266, 326, 432, 571, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 3 cut(s) 493, 597, 746
HpySE526I ACGT 2 cut(s) 47, 553
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 196, 330, 677
HspAI GCGC 2 cut(s) 306, 535
Kzo9I GATC 3 cut(s) 68, 503, 579
Lsp1109I GCAGC 2 cut(s) 88, 555
LweI GCATC 2 cut(s) 49, 546
MaeI CTAG 4 cut(s) 269, 393, 441, 584
MaeII ACGT 2 cut(s) 47, 553
MaeIII GTNAC 2 cut(s) 48, 707
MalI GATC 3 cut(s) 70, 505, 581
MbiI CCGCTC 2 cut(s) 282, 720
MboI GATC 3 cut(s) 68, 503, 579
MboII GAAGA 5 cut(s) 16, 82, 125, 159, 643
MhlI GDGCHC 1 cut(s) 607
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 4 cut(s) 143, 321, 647, 667
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 2 cut(s) 173, 355
MnlI CCTC 8 cut(s) 63, 184, 187, 305, 534, 606, 608, 734
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 199, 376, 456
Mva1269I GAATGC 2 cut(s) 26, 103
MvaI CCWGG 3 cut(s) 199, 376, 456
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeI CATATG 1 cut(s) 759
NdeII GATC 3 cut(s) 68, 503, 579
NlaIII CATG 3 cut(s) 196, 330, 677
NmuCI GTSAC 1 cut(s) 48
NsbI TGCGCA 1 cut(s) 536
PagI TCATGA 1 cut(s) 673
PceI AGGCCT 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PctI GAATGC 2 cut(s) 26, 103
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 12, 103, 284, 570, 722
PleI GAGTC 2 cut(s) 172, 355
PpsI GAGTC 2 cut(s) 172, 355
Psp124BI GAGCTC 1 cut(s) 607
Psp6I CCWGG 3 cut(s) 197, 374, 454
PspGI CCWGG 3 cut(s) 197, 374, 454
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstI CTGCAG 1 cut(s) 68
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 5 cut(s) 11, 102, 283, 569, 721
Sau3AI GATC 3 cut(s) 68, 503, 579
SchI GAGTC 2 cut(s) 173, 355
ScrFI CCNGG 3 cut(s) 199, 376, 456
SduI GDGCHC 1 cut(s) 607
SfaNI GCATC 2 cut(s) 49, 546
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 4 cut(s) 143, 321, 647, 667
SseBI AGGCCT 1 cut(s) 751
SsiI CCGC 4 cut(s) 282, 332, 342, 720
SspMI CTAG 4 cut(s) 269, 393, 441, 584
SstI GAGCTC 1 cut(s) 607
StuI AGGCCT 1 cut(s) 751
StyD4I CCNGG 3 cut(s) 197, 374, 454
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 2 cut(s) 50, 556
TaqI TCGA 3 cut(s) 437, 547, 607
TasI AATT 4 cut(s) 143, 321, 647, 667
TauI GCSGC 2 cut(s) 285, 723
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 10, 101, 568
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 17, 159, 672
XapI RAATTY 1 cut(s) 143
XspI CTAG 4 cut(s) 269, 393, 441, 584
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.