RchiOBHm_Chr4g0385271

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000849
Physical Location & Seq
Reverse (-)
746333 .. 746665
333 bp
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UTR
Exon/CDS
Intron
PRQ35878

Sequence Viewer

Length: 333 bp
ATGTCTGCTAAGAACTTATCCTCGGGAACAACCTATACAGCTTACCTTGTGTATCAGCTCGCAGAAGTAAGATCGGGGTTGGCAAGAACACCTATTGTGTTGCGCGTCAATTATCGACAAAGTGCAATTGTGAGTGTGCATAGTGTGATCCTAGACCCTATGCCTCAGGAAGCTCGACACGGAGGAGATGGGTGGATGGAGATTGAGATGGGTCAATTCTTCATTGAACAAGGAAATGATGATGCTGCTATAGAGTGCAGTGTAACGGAAGTTAGTAACCTAAAGGGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTATGCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

110

Amino Acids

12.1

Weight (kDa)

5.02

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 2 - 107 1.8e-21 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 4 cut(s) 41, 58, 173, 313
AluI AGCT 4 cut(s) 41, 58, 173, 313
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 2 cut(s) 289, 317
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 22
AxyI CCTNAGG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 232
BccI CCATC 3 cut(s) 182, 190, 202
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 246, 289
BlsI GCNGC 2 cut(s) 247, 290
BmeT110I CYCGRG 1 cut(s) 22
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 291, 319
BsiHKCI CYCGRG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 2 cut(s) 291, 319
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 2 cut(s) 71, 147
BspACI CCGC 1 cut(s) 288
BspANI GGCC 2 cut(s) 291, 319
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 105
BspPI GGATC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 71, 147
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 9, 165, 314
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 74, 150
BstMBI GATC 2 cut(s) 71, 147
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 291, 319
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 105
CseI GACGC 1 cut(s) 94
CviJI RGCY 6 cut(s) 41, 58, 173, 291, 313, 319
CviKI_1 RGCY 6 cut(s) 41, 58, 173, 291, 313, 319
DdeI CTNAG 3 cut(s) 9, 165, 314
DpnI GATC 2 cut(s) 73, 149
DpnII GATC 2 cut(s) 71, 147
Eco147I AGGCCT 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 327
FaiI YATR 7 cut(s) 36, 141, 161, 251, 323, 327, 329
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 246, 289
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 246, 289
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 246, 289
HaeIII GGCC 2 cut(s) 291, 319
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 24, 167
HpyAV CCTTC 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 125, 139, 258, 325
HpyF3I CTNAG 3 cut(s) 9, 165, 314
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 71, 147
LpnPI CCDG 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 262, 275
MalI GATC 2 cut(s) 73, 149
MboI GATC 2 cut(s) 71, 147
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 126
MluCI AATT 3 cut(s) 109, 126, 215
MnlI CCTC 4 cut(s) 31, 174, 176, 302
Mph1103I ATGCAT 1 cut(s) 327
MunI CAATTG 1 cut(s) 126
MvnI CGCG 1 cut(s) 105
NdeI CATATG 1 cut(s) 327
NdeII GATC 2 cut(s) 71, 147
NsiI ATGCAT 1 cut(s) 327
PceI AGGCCT 1 cut(s) 319
PkrI GCNGC 2 cut(s) 247, 290
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
SatI GCNGC 2 cut(s) 246, 289
Sau3AI GATC 2 cut(s) 71, 147
SetI ASST 9 cut(s) 35, 43, 48, 60, 94, 175, 282, 307, 315
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 3 cut(s) 109, 126, 215
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 319
TaqI TCGA 2 cut(s) 115, 175
TasI AATT 3 cut(s) 109, 126, 215
TauI GCSGC 1 cut(s) 291
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 2 cut(s) 195, 281
TspRI CASTG 1 cut(s) 265
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.