RLG00000010242

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000849
Physical Location & Seq
Forward (+)
64614556 .. 64616041
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010242

Sequence Viewer

Length: 393 bp
ATGCCTGCAGATCATCGATCAGCTGTCTGTTCTCTGTTTAGAATAGCAGTGGATTCTGATATTGTCTGGGAGAGGCTTCTTCCTCCCCATTATAAGCAAATCATTTCGGAATCTTCATCATCGTCCTCGTCTTTCATTTCCATGCCCAAGAAGGATCTCTACTTTTATCTCTGCACTTACCCTATCATCATAGGCAATGGTAACATGAGCTTTGCACTAGATAAGCAGAGCGGCCCTATGCCTAAGGAAGCTCGACGCAGAGGAGATGGGTGGATGGAGATTGAGATGGGTCAATTCTTCATTGAACAAGGAAATGATGATGCTGCTGTAGAGTGCAGTGTGACGGAAGTTAGTAACCTAAAGATAGAGCGGCCTCATTGTGGAAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

5.57

Isoelectric Point (pI)

81.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 55 - 120 3.7e-07 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AccBSI CCGCTC 2 cut(s) 231, 370
AciI CCGC 2 cut(s) 231, 370
AclWI GGATC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 3 cut(s) 23, 210, 251
AluI AGCT 3 cut(s) 23, 210, 251
AlwI GGATC 1 cut(s) 162
AoxI GGCC 2 cut(s) 232, 371
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 260, 268, 280
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 6, 327
BisI GCNGC 3 cut(s) 232, 324, 371
BlsI GCNGC 3 cut(s) 233, 325, 372
BmgT120I GGNCC 1 cut(s) 233
BmsI GCATC 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 16
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 2 cut(s) 157, 355
BshFI GGCC 2 cut(s) 234, 373
BshVI ATCGAT 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 380
BsnI GGCC 2 cut(s) 234, 373
Bsp143I GATC 3 cut(s) 10, 17, 154
BspACI CCGC 2 cut(s) 231, 370
BspANI GGCC 2 cut(s) 234, 373
BspDI ATCGAT 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 162
BsrBI CCGCTC 2 cut(s) 231, 370
BsrDI GCAATG 1 cut(s) 202
BssMI GATC 3 cut(s) 10, 17, 154
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 3 cut(s) 13, 20, 157
BstMBI GATC 3 cut(s) 10, 17, 154
BstSFI CTRYAG 2 cut(s) 6, 327
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 234, 373
BsuTUI ATCGAT 1 cut(s) 16
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 2 cut(s) 54, 343
BtsIMutI CAGTG 2 cut(s) 54, 343
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 16
CseI GACGC 1 cut(s) 264
CviAII CATG 2 cut(s) 142, 205
CviJI RGCY 6 cut(s) 23, 76, 210, 234, 251, 373
CviKI_1 RGCY 6 cut(s) 23, 76, 210, 234, 251, 373
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 12, 19, 156
DpnII GATC 3 cut(s) 10, 17, 154
Eco81I CCTNAGG 1 cut(s) 243
FaeI CATG 2 cut(s) 145, 208
FaiI YATR 5 cut(s) 93, 143, 191, 206, 239
FatI CATG 2 cut(s) 141, 204
Fnu4HI GCNGC 3 cut(s) 232, 324, 371
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 232, 324, 371
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 232, 324, 371
HaeIII GGCC 2 cut(s) 234, 373
HgaI GACGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 145, 208
HinfI GANTC 2 cut(s) 53, 110
Hpy188I TCNGA 2 cut(s) 58, 109
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 145, 378
HpyCH4V TGCA 4 cut(s) 8, 174, 215, 336
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 145, 208
Kzo9I GATC 3 cut(s) 10, 17, 154
LpnPI CCDG 2 cut(s) 18, 52
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 200, 340, 353
MalI GATC 3 cut(s) 12, 19, 156
MbiI CCGCTC 2 cut(s) 231, 370
MboI GATC 3 cut(s) 10, 17, 154
MboII GAAGA 3 cut(s) 71, 105, 289
MflI RGATCY 1 cut(s) 154
MluCI AATT 1 cut(s) 293
MnlI CCTC 5 cut(s) 66, 93, 136, 254, 384
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 23
NdeII GATC 3 cut(s) 10, 17, 154
NlaIII CATG 2 cut(s) 145, 208
NmuCI GTSAC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 53, 110
PkrI GCNGC 3 cut(s) 233, 325, 372
PsiI TTATAA 1 cut(s) 93
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 3 cut(s) 232, 324, 371
Sau3AI GATC 3 cut(s) 10, 17, 154
Sau96I GGNCC 1 cut(s) 233
SetI ASST 5 cut(s) 25, 212, 253, 360, 389
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 6, 327
SgeI CNNG 9 cut(s) 17, 79, 139, 154, 160, 217, 230, 264, 320
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 1 cut(s) 293
SsiI CCGC 2 cut(s) 231, 370
SspMI CTAG 1 cut(s) 218
TaqI TCGA 2 cut(s) 16, 253
TasI AATT 1 cut(s) 293
TauI GCSGC 2 cut(s) 234, 373
TfiI GAWTC 2 cut(s) 53, 110
TscAI CASTG 2 cut(s) 54, 343
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 105, 124, 289
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 54, 343
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.