Rroxscaffold_5G00333190

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
606468 .. 608574
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333190.1

Sequence Viewer

Length: 348 bp
ATGAAGAGGTTGCCTGCCGAGTGCGTCTCCAACATCATTTCCTTTACATCACCTCGCGATGCCTGCAGATCATCAGCTGTCTCTTCTCTGTTTAGAATAGCTGTGGATTCTGATATTGTCTGGGAGAGGCTTCTTCCTCCCCATTATAAGCAAATCATTTCGGAATCTTCATCGTCCCCGTCTTTGATTTCCATGTCTAAGAAGGATCTCTACTTTTATCTCTTCACTCACCCCATCATCATAGGCAATGGTAACATGGCAAGATATGCAGCAAATATTATAGATACATTGTGTGCTATATATGGAGGAATGAACAGCCATATAGGGACTAGGGTTTGTCGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

9.05

Isoelectric Point (pI)

71.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 44 2.9e-07 F-box-like
F-box PF00646 3 - 42 3.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccII CGCG 1 cut(s) 57
AclWI GGATC 1 cut(s) 213
AluBI AGCT 2 cut(s) 77, 101
AluI AGCT 2 cut(s) 77, 101
Alw26I GTCTC 2 cut(s) 31, 85
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 42, 221
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbvI GCAGC 1 cut(s) 281
BccI CCATC 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 31, 85
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bse3DI GCAATG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 57
BslFI GGGAC 2 cut(s) 160, 340
BsmAI GTCTC 2 cut(s) 31, 85
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 160, 340
Bsp143I GATC 2 cut(s) 68, 205
Bsp68I TCGCGA 1 cut(s) 57
BspFNI CGCG 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 2 cut(s) 68, 205
Bst6I CTCTTC 2 cut(s) 88, 227
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 15, 64
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 2 cut(s) 71, 208
BstMAI GTCTC 2 cut(s) 31, 85
BstMBI GATC 2 cut(s) 68, 205
BstMWI GCNNNNNNNGC 2 cut(s) 63, 266
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 72
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 15, 64
CseI GACGC 1 cut(s) 13
CviAII CATG 2 cut(s) 193, 256
CviJI RGCY 4 cut(s) 77, 101, 130, 318
CviKI_1 RGCY 4 cut(s) 77, 101, 130, 318
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 70, 207
DpnII GATC 2 cut(s) 68, 205
Eam1104I CTCTTC 2 cut(s) 88, 227
EarI CTCTTC 2 cut(s) 88, 227
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 2 cut(s) 196, 259
FaqI GGGAC 2 cut(s) 160, 340
FatI CATG 2 cut(s) 192, 255
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 270
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 196, 259
HinfI GANTC 2 cut(s) 107, 164
HphI GGTGA 2 cut(s) 42, 221
Hpy188I TCNGA 2 cut(s) 112, 163
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 66, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 266
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 196, 259
Kzo9I GATC 2 cut(s) 68, 205
LpnPI CCDG 3 cut(s) 27, 76, 106
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 70, 207
MboI GATC 2 cut(s) 68, 205
MboII GAAGA 5 cut(s) 16, 75, 125, 159, 214
MflI RGATCY 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 63, 120, 147, 299
MspA1I CMGCKG 1 cut(s) 77
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 63, 266
NdeII GATC 2 cut(s) 68, 205
NlaIII CATG 2 cut(s) 196, 259
NmeAIII GCCGAG 1 cut(s) 43
NruI TCGCGA 1 cut(s) 57
PfeI GAWTC 2 cut(s) 107, 164
PkrI GCNGC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 147
PstI CTGCAG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 77
RruI TCGCGA 1 cut(s) 57
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 68, 205
SetI ASST 4 cut(s) 11, 55, 79, 103
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 64
SspI AATATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 330
TfiI GAWTC 2 cut(s) 107, 164
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 17, 159, 326
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.