Rroxscaffold_5G00333200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000849
Physical Location & Seq
Reverse (-)
609374 .. 615211
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333200.1

Sequence Viewer

Length: 285 bp
ATGGCTAAGGTTTTGAAGGAGCAATGGGTGACCAAGCTGTCACAACACAGATATGGATTTGAATCGCCTCTTGTGTCGTGTATCAGTTATCAACAAAGTGACGTAGTCACTGTGCATCGTGTGATCCTAGACCCTAGGCCTCCGCTACCGCGAGCTCGAGACAGAGGAGATGGGTGGATAGAGGTTGAGATAGGTGAATTTTTCATTGAACAGGGAGACGATGATGATGTTGTAGAGTGCAGTGTAAAGGAAGTCAGTAACTCTAAGCGTGGCATTCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

94

Amino Acids

10.81

Weight (kDa)

5.55

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 9 - 91 2e-09 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccII CGCG 1 cut(s) 151
AciI CCGC 2 cut(s) 143, 149
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 197
AgsI TTSAA 3 cut(s) 16, 62, 209
AluBI AGCT 2 cut(s) 37, 155
AluI AGCT 2 cut(s) 37, 155
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 153, 210
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 40, 206
AvaI CYCGRG 1 cut(s) 156
AvrII CCTAGG 1 cut(s) 134
BanII GRGCYC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 153, 210
BfaI CTAG 2 cut(s) 128, 135
BlnI CCTAGG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 156
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 61
BseMI GCAATG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 153, 210
BsmBI CGTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 2 cut(s) 143, 149
BspANI GGCC 1 cut(s) 139
BspFNI CGCG 1 cut(s) 151
BspPI GGATC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 6, 264
BstEII GGTNACC 1 cut(s) 28
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 153, 210
BstMBI GATC 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 28
BstUI CGCG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 108, 247
Cac8I GCNNGC 1 cut(s) 153
CviJI RGCY 4 cut(s) 5, 37, 139, 155
CviKI_1 RGCY 4 cut(s) 5, 37, 139, 155
DdeI CTNAG 2 cut(s) 6, 264
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 134
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 210
FaiI YATR 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 157
FspBI CTAG 2 cut(s) 128, 135
HaeIII GGCC 1 cut(s) 139
HinfI GANTC 1 cut(s) 62
HphI GGTGA 2 cut(s) 40, 206
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 115, 240
HpyF3I CTNAG 2 cut(s) 6, 264
HpySE526I ACGT 1 cut(s) 102
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 1 cut(s) 197
LweI GCATC 1 cut(s) 124
MaeI CTAG 2 cut(s) 128, 135
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 5 cut(s) 28, 39, 98, 106, 257
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 197
MnlI CCTC 4 cut(s) 78, 150, 158, 175
MslI CAYNNNNRTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 273
MvnI CGCG 1 cut(s) 151
NdeII GATC 1 cut(s) 123
NmuCI GTSAC 4 cut(s) 28, 39, 98, 106
PaeR7I CTCGAG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 139
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 157
SetI ASST 6 cut(s) 12, 39, 105, 157, 186, 196
SfaNI GCATC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 197
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 2 cut(s) 143, 149
SspMI CTAG 2 cut(s) 128, 135
SstI GAGCTC 1 cut(s) 157
StuI AGGCCT 1 cut(s) 139
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 197
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 2 cut(s) 115, 247
TseFI GTSAC 4 cut(s) 28, 39, 98, 106
Tsp45I GTSAC 4 cut(s) 28, 39, 98, 106
TspDTI ATGAA 2 cut(s) 193, 266
TspRI CASTG 2 cut(s) 115, 247
Tth111I GACNNNGTC 1 cut(s) 104
XapI RAATTY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 156
XmaJI CCTAGG 1 cut(s) 134
XspI CTAG 2 cut(s) 128, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.