Rroxscaffold_5G00333170

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000849
Physical Location & Seq
Reverse (-)
596929 .. 597479
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333170.1

Sequence Viewer

Length: 300 bp
ATGGATGACTCTTCCACACTCCCGCTCTCAGAAGTAAGATCGGGGTTGGCAAGAACACCTATTGTGTTGCGTGTCAATTATCGACAAAGTGCAGTTGTGAGTGTGCATAGTGTGATCCTAGACCCTATGCCTCAGGAAGCTCGACACAGAGGAGATGGGTGGATGGAGATTGAGATGGGTCAATTCTTCATTGAACAAGGAAATTATGATGCTGCTGTAGAGTGCAGTGTAACGGAAGTTAGTAACCTAAAGAGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTATGCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

4.86

Isoelectric Point (pI)

71.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 13 - 96 1.2e-15 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 25, 255
AciI CCGC 2 cut(s) 23, 255
AclWI GGATC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 140, 280
AluI AGCT 2 cut(s) 140, 280
AlwI GGATC 1 cut(s) 109
AoxI GGCC 2 cut(s) 256, 284
ApeKI GCWGC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 199
BccI CCATC 3 cut(s) 149, 157, 169
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 213, 256
BlsI GCNGC 2 cut(s) 214, 257
BmsI GCATC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 10, 168
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 42, 146
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 2 cut(s) 111, 244
BshFI GGCC 2 cut(s) 258, 286
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 2 cut(s) 258, 286
Bsp143I GATC 2 cut(s) 38, 114
BspACI CCGC 2 cut(s) 23, 255
BspANI GGCC 2 cut(s) 258, 286
BspCNI CTCAG 2 cut(s) 41, 145
BspPI GGATC 1 cut(s) 109
BsrBI CCGCTC 2 cut(s) 25, 255
BssMI GATC 2 cut(s) 38, 114
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 28, 132, 281
BstF5I GGATG 2 cut(s) 10, 168
BstKTI GATC 2 cut(s) 41, 117
BstMBI GATC 2 cut(s) 38, 114
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 258, 286
BtsCI GGATG 2 cut(s) 10, 168
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
CviJI RGCY 4 cut(s) 140, 258, 280, 286
CviKI_1 RGCY 4 cut(s) 140, 258, 280, 286
DdeI CTNAG 3 cut(s) 28, 132, 281
DpnI GATC 2 cut(s) 40, 116
DpnII GATC 2 cut(s) 38, 114
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 294
FaiI YATR 6 cut(s) 108, 128, 207, 290, 294, 296
FauI CCCGC 1 cut(s) 30
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 213, 256
FokI GGATG 2 cut(s) 17, 175
Fsp4HI GCNGC 2 cut(s) 213, 256
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 213, 256
HaeIII GGCC 2 cut(s) 258, 286
HinfI GANTC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 4 cut(s) 92, 106, 225, 292
HpyF3I CTNAG 3 cut(s) 28, 132, 281
Kzo9I GATC 2 cut(s) 38, 114
LpnPI CCDG 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 229, 242
MalI GATC 2 cut(s) 40, 116
MbiI CCGCTC 2 cut(s) 25, 255
MboI GATC 2 cut(s) 38, 114
MboII GAAGA 2 cut(s) 3, 178
MluCI AATT 3 cut(s) 76, 182, 202
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 141, 143, 269
Mph1103I ATGCAT 1 cut(s) 294
NdeI CATATG 1 cut(s) 294
NdeII GATC 2 cut(s) 38, 114
NsiI ATGCAT 1 cut(s) 294
PceI AGGCCT 1 cut(s) 286
PkrI GCNGC 2 cut(s) 214, 257
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
SatI GCNGC 2 cut(s) 213, 256
Sau3AI GATC 2 cut(s) 38, 114
SchI GAGTC 1 cut(s) 2
SetI ASST 5 cut(s) 61, 142, 249, 274, 282
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 216
SgeI CNNG 8 cut(s) 34, 54, 63, 83, 131, 146, 153, 209
Sse9I AATT 3 cut(s) 76, 182, 202
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 23, 255
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 286
TaqI TCGA 2 cut(s) 82, 142
TasI AATT 3 cut(s) 76, 182, 202
TauI GCSGC 1 cut(s) 258
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.