Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

631865 .. 633642

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGTTAACAGATTTGGAGAAGTTACCGGAGGAGTGCATGGCCCATATTCTTTCCCTCACGTCCCCCAAAGACGCGTGCAGATCAGCCGCCGTCTCCTCCGCCTTTCGCTCCGCCGCGCAATCCCAAACTCTTTGGGAACGTTTCTTACCCCATGACTATCGTCAAATCATCTCTCGATCCGTTTCTCCTCCTCTGCCATCAATCTCCTCTCTCTCTAACAAGGACCTCTACTTCCGTCTCTGCGACTCCCCCATCTTCCTCGACGATGGCAATTTGAGTTTCTCATTCGATAAATTGAGTGGTAAAAAATGTTGGATGCTGGGAGCCAGACTGTTGAGCATTACATGGGGAGACACTCCAGATTACTGGGAATGGAATTCTCTACCCGAATCCAGGTTCTCCGAAGTGGCTCAGCTCAGACTTGTATGGTGGCTTGAGATTAAGGGAAACATAGACACTAAAATTTTGTCCCCCCGAACAACCTACGCAGCTTACCTTGTATATCAGTGTCCAGAAGAATTACAATGGGGGTTTCAGGGAATGCCTATGACGGTGCGTGTCACCAATGAACAAAATGAAGTTGTAGCTGAGCATGATGTGTTCCTAGCAGACCCGCCAGAAGACATGCCTCCACAAGCTCGAAGCAGAGGAGATGGATGGATGGAGATTGAGTTGGGTGAAATTTTCAACCAAGAAGATGATGTTACTGTGGAGTTTCGTCTAAGGGAAACTGAGAGTGGCGAGCCTAAGGGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTAAACTATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

267

Amino Acids

30.55

Weight (kDa)

4.65

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 47	2.1e-07	F-box domain
F-box-like	PF12937	7 - 49	1.9e-09	F-box-like
PP2	PF14299	103 - 263	2.1e-51	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 119
AciI	CCGC	6 cut(s)	90, 102, 114, 117, 617, 756
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	379, 465, 684
AfiI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	5 cut(s)	418, 494, 590, 641, 781
AluI	AGCT	5 cut(s)	418, 494, 590, 641, 781
Alw26I	GTCTC	3 cut(s)	100, 245, 348
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	42, 757, 785
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	3 cut(s)	379, 465, 684
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	43, 226
AsuHPI	GGTGA	2 cut(s)	556, 692
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	6 cut(s)	208, 263, 263, 650, 654, 658
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	100, 245, 348
BfaI	CTAG	1 cut(s)	608
BisI	GCNGC	4 cut(s)	90, 117, 492, 757
BlpI	GCTNAGC	2 cut(s)	414, 591
BlsI	GCNGC	4 cut(s)	91, 118, 493, 758
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	43, 226
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	379
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu1102I	GCTNAGC	2 cut(s)	414, 591
BpuEI	CTTGAG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 755, 766
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	324, 665, 669
BseLI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BseMII	CTCAG	4 cut(s)	428, 433, 582, 726
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	6 cut(s)	47, 88, 180, 183, 199, 666
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	77, 119
BshFI	GGCC	3 cut(s)	44, 759, 787
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	49, 457
BslI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BsmAI	GTCTC	3 cut(s)	100, 245, 348
BsmBI	CGTCTC	2 cut(s)	100, 245
BsmFI	GGGAC	2 cut(s)	49, 457
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	44, 759, 787
Bsp143I	GATC	2 cut(s)	83, 179
Bsp1720I	GCTNAGC	2 cut(s)	414, 591
BspACI	CCGC	6 cut(s)	90, 102, 114, 117, 617, 756
BspANI	GGCC	3 cut(s)	44, 759, 787
BspCNI	CTCAG	4 cut(s)	427, 432, 583, 727
BspFNI	CGCG	2 cut(s)	77, 119
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	83, 179
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	3 cut(s)	336, 556, 712
BstC8I	GCNNGC	2 cut(s)	79, 746
BstDEI	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
BstF5I	GGATG	3 cut(s)	324, 665, 669
BstFNI	CGCG	2 cut(s)	77, 119
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	86, 182
BstMAI	GTCTC	3 cut(s)	100, 245, 348
BstMBI	GATC	2 cut(s)	83, 179
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	77, 119
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	44, 759, 787
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	324, 665, 669
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	79, 746
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	43, 226
CseI	GACGC	1 cut(s)	83
CviAII	CATG	5 cut(s)	40, 155, 348, 596, 628
DdeI	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
DpnI	GATC	2 cut(s)	85, 181
DpnII	GATC	2 cut(s)	83, 179
EciI	GGCGGA	2 cut(s)	91, 103
Eco147I	AGGCCT	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	395
Esp3I	CGTCTC	2 cut(s)	100, 245
FaeI	CATG	5 cut(s)	43, 158, 351, 599, 631
FaqI	GGGAC	2 cut(s)	49, 457
FatI	CATG	5 cut(s)	39, 154, 347, 595, 627
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FokI	GGATG	3 cut(s)	331, 672, 676
Fsp4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	90, 117, 492, 757
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	44, 759, 787
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	5 cut(s)	43, 158, 351, 599, 631
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	248, 392
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	556, 692
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	406, 422
Hpy188III	TCNNGA	3 cut(s)	177, 362, 515
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	3 cut(s)	336, 556, 712
HpyCH4IV	ACGT	2 cut(s)	62, 142
HpyCH4V	TGCA	2 cut(s)	39, 81
HpyF3I	CTNAG	7 cut(s)	414, 419, 591, 725, 735, 750, 782
HpySE526I	ACGT	2 cut(s)	62, 142
Hsp92II	CATG	5 cut(s)	43, 158, 351, 599, 631
HspAI	GCGC	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	83, 179
LmnI	GCTCC	2 cut(s)	116, 326
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	62, 142
MaeIII	GTNAC	3 cut(s)	24, 562, 706
MalI	GATC	2 cut(s)	85, 181
MboI	GATC	2 cut(s)	83, 179
MboII	GAAGA	4 cut(s)	250, 530, 635, 710
MluCI	AATT	6 cut(s)	274, 296, 379, 465, 521, 684
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	296
MseI	TTAA	2 cut(s)	8, 444
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	77, 119
NdeII	GATC	2 cut(s)	83, 179
NlaIII	CATG	5 cut(s)	43, 158, 351, 599, 631
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	787
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	91, 118, 493, 758
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	43, 226
PspPPI	RGGWCCY	1 cut(s)	226
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
SaqAI	TTAA	2 cut(s)	8, 444
SatI	GCNGC	4 cut(s)	90, 117, 492, 757
Sau3AI	GATC	2 cut(s)	83, 179
Sau96I	GGNCC	2 cut(s)	43, 226
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	309
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	6 cut(s)	274, 296, 379, 465, 521, 684
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	6 cut(s)	90, 102, 114, 117, 617, 756
SspMI	CTAG	1 cut(s)	608
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	3 cut(s)	336, 556, 712
TaiI	ACGT	2 cut(s)	65, 145
TaqI	TCGA	4 cut(s)	178, 264, 291, 643
TasI	AATT	6 cut(s)	274, 296, 379, 465, 521, 684
TauI	GCSGC	3 cut(s)	92, 119, 759
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	8, 444
Tru9I	TTAA	2 cut(s)	8, 444
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	2 cut(s)	585, 594
TspGWI	ACGGA	2 cut(s)	172, 227
TspRI	CASTG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	3 cut(s)	379, 465, 684
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.