FvH4_4g00363

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000849
Physical Location & Seq
Reverse (-)
372323 .. 374006
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00363.t1

Sequence Viewer

Length: 765 bp
ATGAAGAGGCTGCCTGTGGAGTGCGTCTCCCAAATCATATCCTTGACGTCACCTCGTGATGCCTGCAGATCATCAGCTGTGTCTTGTCTCTTCAGGAATGCTGCCGATTCTGATCTTGTGTGGGAGAAGCTTATTCCTTCCAAATTTAAGCGTATCATTTTCGAATCTTCATCCTCCTCGTCTTTGATTTCCATGCCCAGGAAGGCTCTCTACTTTCATCTCTGCACTCACCCCATCATCATAGGCGATGGCCACACGAGCATTGCACTAGATAAGCAGAGCGGCAAGATATGTTATATGGTAGGCGCAAGAGGCCTTGTAATTGCATGGGCGGATACACCCGCTTACTGGCAATGGATGACTCTACCACACTCCAGGTTCTCTGAAGTGGCTAGGCTCAATCGTTTATGGTGGCTTGACATCAAGGCTTGCATATCCACTAACAACTTATCCCCAGGAACAATCTATGCAGCTTACCTTGTTTATCAGCTCTCAGAAATAAGATCGGGGTTGGCGAAAACACCTATTGTGTTGCGCATCAATTATCGACAACGTACAGTTGTGAGGCTGTATAGTGTGATCCTAGACCCTATGCCTCAGCGAGCTCGACTCAGAGGAGATGGGTGGATGGAGATTGAGATGGGTCAATTCTTCAATGAACAAGGAATTGATGATGATGTTGTAGAGTGCAGTATTACAGAAGTTAGTAACCTAAAGAGCGGCCTCATTGTGGAAGGTATTGAGCTTAGGCCTATACATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like PP2

Protein Analysis

255

Amino Acids

28.77

Weight (kDa)

8.84

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 44 9.1e-07 F-box-like
PP2 PF14299 96 - 251 7.3e-45 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc16I TGCGCA 1 cut(s) 536
AccBSI CCGCTC 2 cut(s) 282, 720
AciI CCGC 4 cut(s) 282, 332, 342, 720
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 2 cut(s) 76, 405
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 3 cut(s) 198, 348, 730
AgsI TTSAA 1 cut(s) 655
AjnI CCWGG 3 cut(s) 197, 374, 454
AluBI AGCT 6 cut(s) 77, 130, 473, 490, 605, 745
AluI AGCT 6 cut(s) 77, 130, 473, 490, 605, 745
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 2 cut(s) 31, 92
AlwI GGATC 1 cut(s) 574
AoxI GGCC 4 cut(s) 250, 313, 721, 749
ApeKI GCWGC 3 cut(s) 10, 101, 470
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 308, 537
AsuHPI GGTGA 2 cut(s) 42, 221
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 607
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BauI CACGAG 2 cut(s) 54, 256
Bbv12I GWGCWC 1 cut(s) 607
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 88, 482
BccI CCATC 5 cut(s) 242, 242, 614, 622, 634
BciT130I CCWGG 3 cut(s) 199, 376, 456
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 31, 92
BfaI CTAG 3 cut(s) 269, 393, 584
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 5 cut(s) 11, 102, 283, 471, 721
BlsI GCNGC 5 cut(s) 12, 103, 284, 472, 722
Bme1390I CCNGG 3 cut(s) 199, 376, 456
BmrFI CCNGG 3 cut(s) 199, 376, 456
BmsI GCATC 2 cut(s) 49, 546
BplI GAGNNNNNCTC 4 cut(s) 11, 43, 594, 626
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 2 cut(s) 597, 746
Bpu14I TTCGAA 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 197, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 348, 730
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 2 cut(s) 261, 359
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 3 cut(s) 199, 376, 456
BseDI CCNNGG 2 cut(s) 197, 454
BseGI GGATG 3 cut(s) 170, 363, 633
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 198, 348, 730
BseMI GCAATG 2 cut(s) 261, 359
BseMII CTCAG 3 cut(s) 507, 611, 625
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 166, 630
BseXI GCAGC 2 cut(s) 88, 482
BsgI GTGCAG 2 cut(s) 208, 709
BshFI GGCC 4 cut(s) 252, 315, 723, 751
BsiHKAI GWGCWC 1 cut(s) 607
BslI CCNNNNNNNGG 3 cut(s) 198, 348, 730
BsmAI GTCTC 2 cut(s) 31, 92
BsmBI CGTCTC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 4 cut(s) 252, 315, 723, 751
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 4 cut(s) 68, 112, 503, 579
BspACI CCGC 4 cut(s) 282, 332, 342, 720
BspANI GGCC 4 cut(s) 252, 315, 723, 751
BspCNI CTCAG 3 cut(s) 506, 610, 624
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 574
BspT104I TTCGAA 1 cut(s) 162
BsrBI CCGCTC 2 cut(s) 282, 720
BsrDI GCAATG 2 cut(s) 261, 359
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 197, 454
BssMI GATC 4 cut(s) 68, 112, 503, 579
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 2 cut(s) 54, 256
Bst2BI CACGAG 2 cut(s) 54, 256
Bst2UI CCWGG 3 cut(s) 199, 376, 456
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 64, 430, 603
BstDEI CTNAG 4 cut(s) 493, 597, 611, 746
BstF5I GGATG 3 cut(s) 170, 363, 633
BstHHI GCGC 2 cut(s) 308, 537
BstKTI GATC 4 cut(s) 71, 115, 506, 582
BstMAI GTCTC 2 cut(s) 31, 92
BstMBI GATC 4 cut(s) 68, 112, 503, 579
BstMWI GCNNNNNNNGC 2 cut(s) 258, 312
BstNI CCWGG 3 cut(s) 199, 376, 456
BstSCI CCNGG 3 cut(s) 197, 374, 454
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 88, 482
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 4 cut(s) 252, 315, 723, 751
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 170, 363, 633
Cac8I GCNNGC 3 cut(s) 64, 430, 603
CfoI GCGC 2 cut(s) 308, 537
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 555
CviAII CATG 2 cut(s) 193, 327
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 493, 597, 611, 746
DpnI GATC 4 cut(s) 70, 114, 505, 581
DpnII GATC 4 cut(s) 68, 112, 503, 579
DraIII CACNNNGTG 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 605
Eco147I AGGCCT 2 cut(s) 315, 751
Eco24I GRGCYC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 2 cut(s) 76, 405
EcoICRI GAGCTC 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 197, 374, 454
EcoT38I GRGCYC 1 cut(s) 607
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 2 cut(s) 196, 330
FatI CATG 2 cut(s) 192, 326
FauI CCCGC 1 cut(s) 349
FauNDI CATATG 1 cut(s) 759
Fnu4HI GCNGC 5 cut(s) 11, 102, 283, 471, 721
FokI GGATG 3 cut(s) 157, 370, 640
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 5 cut(s) 11, 102, 283, 471, 721
FspBI CTAG 3 cut(s) 269, 393, 584
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 2 cut(s) 307, 536
GluI GCNGC 5 cut(s) 11, 102, 283, 471, 721
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 4 cut(s) 252, 315, 723, 751
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 308, 537
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 196, 330
Hin6I GCGC 2 cut(s) 306, 535
HinP1I GCGC 2 cut(s) 306, 535
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 107, 164, 361, 609
HphI GGTGA 2 cut(s) 42, 221
Hpy188I TCNGA 4 cut(s) 112, 385, 496, 614
Hpy188III TCNNGA 2 cut(s) 56, 94
HpyAV CCTTC 3 cut(s) 147, 196, 728
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 2 cut(s) 47, 553
HpyCH4V TGCA 7 cut(s) 66, 225, 266, 326, 432, 470, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 312
HpyF3I CTNAG 4 cut(s) 493, 597, 611, 746
HpySE526I ACGT 2 cut(s) 47, 553
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 196, 330
HspAI GCGC 2 cut(s) 306, 535
Kzo9I GATC 4 cut(s) 68, 112, 503, 579
Lsp1109I GCAGC 2 cut(s) 88, 482
LweI GCATC 2 cut(s) 49, 546
MaeI CTAG 3 cut(s) 269, 393, 584
MaeII ACGT 2 cut(s) 47, 553
MaeIII GTNAC 2 cut(s) 48, 707
MalI GATC 4 cut(s) 70, 114, 505, 581
MbiI CCGCTC 2 cut(s) 282, 720
MboI GATC 4 cut(s) 68, 112, 503, 579
MboII GAAGA 4 cut(s) 16, 82, 159, 643
MhlI GDGCHC 1 cut(s) 607
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 5 cut(s) 143, 321, 541, 647, 666
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 2 cut(s) 355, 603
MnlI CCTC 8 cut(s) 63, 184, 187, 305, 558, 606, 608, 734
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 3 cut(s) 199, 376, 456
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 3 cut(s) 199, 376, 456
MwoI GCNNNNNNNGC 2 cut(s) 258, 312
NdeI CATATG 1 cut(s) 759
NdeII GATC 4 cut(s) 68, 112, 503, 579
NlaIII CATG 2 cut(s) 196, 330
NmuCI GTSAC 1 cut(s) 48
NsbI TGCGCA 1 cut(s) 536
NspV TTCGAA 1 cut(s) 162
PceI AGGCCT 2 cut(s) 315, 751
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 107, 164
PkrI GCNGC 5 cut(s) 12, 103, 284, 472, 722
PleI GAGTC 2 cut(s) 355, 603
PpsI GAGTC 2 cut(s) 355, 603
Psp124BI GAGCTC 1 cut(s) 607
Psp6I CCWGG 3 cut(s) 197, 374, 454
PspGI CCWGG 3 cut(s) 197, 374, 454
PstI CTGCAG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 5 cut(s) 11, 102, 283, 471, 721
Sau3AI GATC 4 cut(s) 68, 112, 503, 579
SchI GAGTC 2 cut(s) 355, 603
ScrFI CCNGG 3 cut(s) 199, 376, 456
SduI GDGCHC 1 cut(s) 607
SfaNI GCATC 2 cut(s) 49, 546
SfcI CTRYAG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 162
Sse9I AATT 5 cut(s) 143, 321, 541, 647, 666
SseBI AGGCCT 2 cut(s) 315, 751
SsiI CCGC 4 cut(s) 282, 332, 342, 720
SspMI CTAG 3 cut(s) 269, 393, 584
SstI GAGCTC 1 cut(s) 607
StuI AGGCCT 2 cut(s) 315, 751
StyD4I CCNGG 3 cut(s) 197, 374, 454
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 2 cut(s) 50, 556
TaqI TCGA 3 cut(s) 162, 547, 607
TasI AATT 5 cut(s) 143, 321, 541, 647, 666
TauI GCSGC 2 cut(s) 285, 723
TfiI GAWTC 2 cut(s) 107, 164
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 10, 101, 470
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 4 cut(s) 17, 159, 206, 672
XapI RAATTY 1 cut(s) 143
XspI CTAG 3 cut(s) 269, 393, 584
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.