Prupe.1G003900_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000849
Physical Location & Seq
Reverse (-)
374744 .. 376501
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G003900.1

Sequence Viewer

Length: 771 bp
ATGAATATCATCAGCGTGTTGCCTGCAGAGTGTATCTCCCACATCGTTTCCTGCACAACCCCTCTGGACGCGTGCAGATCATCGCTGGTCTCTCATCTCTTTCGAATTGCTGCGGATTCTGATATTGTGTGGGAGAGATTTCTGCCCCAGGATTATAAGGAGATCATTTCCAGTTCTTTGAACTCCTTGTCCAAGAAGGATCTCTACTTTCATCTTTGCAATCACCCTATCATCATAGGAAATGGTAACATGAGCATGGCACTAGAAAAGCAGAGTGGCAAAAAATGCTATATGGTAGGGGCAAGAGAGCTTACAGTTATATGGGGAGATACACCCCCATATTGGCAATGGATATCTCTACCAGAGTCTAGGTTTGCCCAAGTGGCTGAGCTCAATTATGTGTGGTGGCTTGAGATCAAGGGGTACATAGAGACTAAAAATTTGTCCCCACGAACAGCCTATGCAGCTTATTTTGTCTATCAGCTCTCATCAGAACACAATCCACGGACTGCAACAACTCCTTTTAGGTTCCGTGTTGCTTATGAACAAGGCACAGCAGATGAGCGTAGTGTGATCCTAGATCCTATAACTCATGAAGGTATAGCTCCTCCGCAAGCTCGATACAGAGGCAATGGGTGGATTGAGATTGAGATGGGTGAGTTCATCACTGAAGAAGATAATGCTACTGTGCTATTTAGTCTAATGGAAATTAGTAGTTTCTGTAAGAGCGGCCTCATTGTAGAAGGCATTGAGCTTAGGCCCAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

257

Amino Acids

29.14

Weight (kDa)

5.43

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 729
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 113, 611, 729
AclWI GGATC 3 cut(s) 207, 568, 575
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 147
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 7 cut(s) 310, 391, 467, 484, 605, 617, 754
AluI AGCT 7 cut(s) 310, 391, 467, 484, 605, 617, 754
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 94, 425
AlwI GGATC 3 cut(s) 207, 568, 575
AoxI GGCC 2 cut(s) 730, 758
ApeKI GCWGC 2 cut(s) 110, 464
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AspS9I GGNCC 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 215, 668
AsuII TTCGAA 1 cut(s) 103
BanII GRGCYC 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 97, 476
BccI CCATC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 94, 425
BfaI CTAG 3 cut(s) 263, 369, 578
BfmI CTRYAG 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 3 cut(s) 111, 465, 730
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 3 cut(s) 112, 466, 731
Bme1390I CCNGG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 1 cut(s) 530
BmrFI CCNGG 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bpu10I CCTNAGC 1 cut(s) 755
Bpu1102I GCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 147, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 353, 637
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 147, 503
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 2 cut(s) 353, 637
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 97, 476
BsgI GTGCAG 2 cut(s) 37, 94
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 732, 760
BsiHKAI GWGCWC 1 cut(s) 393
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 94, 425
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 2 cut(s) 732, 760
Bso31I GGTCTC 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 6 cut(s) 77, 162, 199, 414, 573, 580
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 3 cut(s) 113, 611, 729
BspANI GGCC 2 cut(s) 732, 760
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 207, 568, 575
BspT104I TTCGAA 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 729
BsrDI GCAATG 2 cut(s) 353, 637
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 147, 503
BssMI GATC 6 cut(s) 77, 162, 199, 414, 573, 580
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 316, 688
BstAPI GCANNNNNTGC 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 24, 73, 615
BstDEI CTNAG 2 cut(s) 387, 755
BstDSI CCRYGG 1 cut(s) 503
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 6 cut(s) 80, 165, 202, 417, 576, 583
BstMAI GTCTC 2 cut(s) 94, 425
BstMBI GATC 6 cut(s) 77, 162, 199, 414, 573, 580
BstMWI GCNNNNNNNGC 3 cut(s) 285, 383, 464
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 97, 476
BstX2I RGATCY 2 cut(s) 199, 580
BstYI RGATCY 2 cut(s) 199, 580
BsuRI GGCC 2 cut(s) 732, 760
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 3 cut(s) 24, 73, 615
CciI TCATGA 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 759
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 424
CviAII CATG 3 cut(s) 250, 256, 593
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 387, 755
DpnI GATC 6 cut(s) 79, 164, 201, 416, 575, 582
DpnII GATC 6 cut(s) 77, 162, 199, 414, 573, 580
Ecl136II GAGCTC 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 147
EcoRV GATATC 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 393
FaeI CATG 3 cut(s) 253, 259, 596
FaqI GGGAC 1 cut(s) 430
FatI CATG 3 cut(s) 249, 255, 592
Fnu4HI GCNGC 3 cut(s) 111, 465, 730
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 3 cut(s) 111, 465, 730
FspBI CTAG 3 cut(s) 263, 369, 578
GluI GCNGC 3 cut(s) 111, 465, 730
HaeIII GGCC 2 cut(s) 732, 760
HgaI GACGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 253, 259, 596
HinfI GANTC 2 cut(s) 116, 365
HphI GGTGA 2 cut(s) 215, 668
Hpy188I TCNGA 2 cut(s) 121, 493
Hpy188III TCNNGA 2 cut(s) 65, 593
HpyAV CCTTC 3 cut(s) 190, 590, 737
HpyCH4III ACNGT 2 cut(s) 316, 688
HpyCH4V TGCA 6 cut(s) 26, 54, 75, 219, 464, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 383, 464
HpyF3I CTNAG 2 cut(s) 387, 755
Hsp92II CATG 3 cut(s) 253, 259, 596
Kzo9I GATC 6 cut(s) 77, 162, 199, 414, 573, 580
LmnI GCTCC 1 cut(s) 610
LpnPI CCDG 8 cut(s) 36, 50, 64, 71, 134, 161, 184, 375
Lsp1109I GCAGC 2 cut(s) 97, 476
MaeI CTAG 3 cut(s) 263, 369, 578
MaeIII GTNAC 1 cut(s) 245
MalI GATC 6 cut(s) 79, 164, 201, 416, 575, 582
MbiI CCGCTC 1 cut(s) 729
MboI GATC 6 cut(s) 77, 162, 199, 414, 573, 580
MboII GAAGA 2 cut(s) 683, 686
MflI RGATCY 2 cut(s) 199, 580
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 4 cut(s) 105, 394, 439, 708
MluI ACGCGT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 4 cut(s) 72, 618, 620, 743
MslI CAYNNNNRTG 2 cut(s) 14, 254
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 285, 383, 464
NdeII GATC 6 cut(s) 77, 162, 199, 414, 573, 580
NlaIII CATG 3 cut(s) 253, 259, 596
NlaIV GGNNCC 1 cut(s) 530
NspV TTCGAA 1 cut(s) 103
PagI TCATGA 1 cut(s) 592
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 112, 466, 731
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PsiI TTATAA 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 1 cut(s) 759
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 199, 580
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 14, 254
SacI GAGCTC 1 cut(s) 393
SatI GCNGC 3 cut(s) 111, 465, 730
Sau3AI GATC 6 cut(s) 77, 162, 199, 414, 573, 580
Sau96I GGNCC 1 cut(s) 759
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 14, 254
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 4 cut(s) 105, 394, 439, 708
SsiI CCGC 3 cut(s) 113, 611, 729
SspMI CTAG 3 cut(s) 263, 369, 578
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 316, 688
TaqI TCGA 2 cut(s) 103, 619
TasI AATT 4 cut(s) 105, 394, 439, 708
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 1 cut(s) 673
TseI GCWGC 2 cut(s) 110, 464
TspDTI ATGAA 5 cut(s) 17, 200, 558, 609, 652
TspGWI ACGGA 2 cut(s) 520, 521
TspRI CASTG 1 cut(s) 673
XapI RAATTY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XspI CTAG 3 cut(s) 263, 369, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.