Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000849

Physical Location & Seq

Genomic Coordinates Reverse (-)

374312 .. 375784

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAACATGATGATCAGTATGCTGCCTGTGGAGTGCATCTCCCACATCATTTCCCTTACCTCCCCTCGCGATGCCTGCAGATCATCTCTAGTCTCTTCTGTCTTCAGAGAAGCTGCCGATTCCGATTTTGTATGGAAGAGCTATTTGCCTCCAGATATTAAGCAAATCATTTCGAAATCGTTGTTGCCTTCGCCATCATCCTTGAATTCCATCTCCATGAAGGATCTCTACTACTATCTTCGTATTCACCACCAACACATTGTCTTAGATGGTAACATGAGCTTTGCGCTAGAAGAGAAGAGTGGAAAGAAATGTTATATGATAGGGGCAAGAGGGCTTTCAATTGCGGGGGAAGAAGATAAACTCGGTTATTGGCAGTGGACAACCGTACCAGCATCAAGGTTTTGTGAAGTAGCTGAGCTGAAAAATGTGTTGGGGCTCGACATCAAGGCGCGCATAAAGACTAGAATGTTGTCCCCGGGTACAACCTATGCGGCTTACTTCGTGTATCAGCTCCAAGGATGCAGATTTGGGTTTGCACGAACGCCGATCGAGTTTCGTGTCAGTTGGGAACATAGCCGAGTAGAAGCGATTTGGCATGGGGTGGTGCTAGACCCTTCCACAGTGTCGCCACGAGCTCGATACAGAGGAGACGGGTGGATGGAGGTGGAGATGGGTGAGTTCTTCGTCAAAGAAGGTGACGACGCTACTGTAGAGTGTAGTGTGAGGGAAGTAAATGGCACTAAGAGTGGCCTCCTTGTGGAAGGCATTGAGATTAGGCCTAAACTAGACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like PP2

Protein Analysis

267

Amino Acids

30.05

Weight (kDa)

7.0

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 47	5.6e-06	F-box domain
F-box-like	PF12937	7 - 48	8.4e-08	F-box-like
PP2	PF14299	104 - 262	1.1e-43	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24560
fragaria_vesca	FvH4_4g00360 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00362 FvH4_4g00363 FvH4_4g00370 FvH4_4g03690
malus_domestica	MD04G1004100.v1.1
prunus_persica	Prupe.1G003600_v2.0.a1 Prupe.1G003600_v2.0.a1 Prupe.1G003700_v2.0.a1 Prupe.1G003900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385231 RchiOBHm_Chr4g0385251 RchiOBHm_Chr4g0385271 RchiOBHm_Chr4g0385301 RchiOBHm_Chr4g0385311 RchiOBHm_Chr7g0223921
rosa_laevigata	RLG00000010240 RLG00000010241 RLG00000010242 RLG00000010243 RLG00000010246
rosa_multiflora	Rmu_co8308613.1_g000001 Rmu_co8351707.1_g000001 Rmu_co8387853.1_g000001 Rmu_sc0001259.1_g000014 Rmu_sc0008084.1_g000004 Rmu_sc0008734.1_g000008 Rmu_ssc0000207.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235190 Rroxscaffold_5G00333160 Rroxscaffold_5G00333170 Rroxscaffold_5G00333190 Rroxscaffold_5G00333200 Rroxscaffold_5G00333220
rosa_rugosa	Rorug03G0300100 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300300 Rorug03G0300400
rosa_samantha	Rh4AG003500 Rh4AG003600 Rh4AG003900 Rh4AG004000 Rh4BG002900 Rh4BG003100 Rh4BG003400 Rh4BG003500 Rh4CG004500 Rh4CG004800 Rh4CG005000 Rh4CG005100 Rh4DG003500 Rh4DG003600 Rh4DG003700 Rh7AG363900 Rh7CG382700
rosa_wichuraiana	Rw4G000490 Rw4G000500 Rw4G000520 Rw4G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	72, 457
AciI	CCGC	2 cut(s)	350, 497
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	2 cut(s)	393, 487
AfiI	CCNNNNNNNGG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	2 cut(s)	208, 345
AjiI	CACGTC	1 cut(s)	796
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	7 cut(s)	116, 144, 285, 419, 424, 517, 641
AluI	AGCT	7 cut(s)	116, 144, 285, 419, 424, 517, 641
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	100, 648
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	2 cut(s)	754, 782
ApeKI	GCWGC	2 cut(s)	25, 116
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	292, 457, 459
AsuC2I	CCSGG	2 cut(s)	482, 483
AsuHPI	GGTGA	3 cut(s)	242, 692, 713
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BanII	GRGCYC	2 cut(s)	444, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	12, 103
BccI	CCATC	5 cut(s)	205, 221, 266, 658, 670
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	482, 483
BcoDI	GTCTC	2 cut(s)	100, 648
BfaI	CTAG	5 cut(s)	92, 293, 468, 614, 791
BfmI	CTRYAG	2 cut(s)	79, 714
BisI	GCNGC	3 cut(s)	26, 117, 498
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	3 cut(s)	27, 118, 499
Bme1390I	CCNGG	2 cut(s)	482, 483
BmeT110I	CYCGRG	1 cut(s)	481
BmgBI	CACGTC	1 cut(s)	796
BmrFI	CCNGG	2 cut(s)	482, 483
BmsI	GCATC	4 cut(s)	48, 64, 407, 515
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	482, 483
BsaJI	CCNNGG	3 cut(s)	480, 481, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
BseDI	CCNNGG	3 cut(s)	480, 481, 520
BseGI	GGATG	3 cut(s)	200, 530, 669
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMII	CTCAG	1 cut(s)	411
BsePI	GCGCGC	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	12, 103
Bsh1236I	CGCG	2 cut(s)	72, 457
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	756, 784
BsiEI	CGRYCG	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	2 cut(s)	100, 648
BsmBI	CGTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	756, 784
BsoBI	CYCGRG	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	444, 643
Bsp143I	GATC	4 cut(s)	15, 83, 226, 552
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	2 cut(s)	350, 497
BspANI	GGCC	2 cut(s)	756, 784
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	2 cut(s)	72, 457
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	480, 481, 520
BssHII	GCGCGC	1 cut(s)	455
BssMI	GATC	4 cut(s)	15, 83, 226, 552
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	636
Bst4CI	ACNGT	3 cut(s)	391, 628, 715
Bst6I	CTCTTC	4 cut(s)	103, 134, 291, 296
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	79, 457
BstDEI	CTNAG	3 cut(s)	268, 420, 747
BstF5I	GGATG	3 cut(s)	200, 530, 669
BstFNI	CGCG	2 cut(s)	72, 457
BstHHI	GCGC	3 cut(s)	292, 457, 459
BstKTI	GATC	4 cut(s)	18, 86, 229, 555
BstMAI	GTCTC	2 cut(s)	100, 648
BstMBI	GATC	4 cut(s)	15, 83, 226, 552
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	480, 481
BstSFI	CTRYAG	2 cut(s)	79, 714
BstUI	CGCG	2 cut(s)	72, 457
BstV1I	GCAGC	2 cut(s)	12, 103
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	756, 784
BtgZI	GCGATG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	3 cut(s)	200, 530, 669
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	386, 633
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	79, 457
CfoI	GCGC	3 cut(s)	292, 457, 459
Cfr9I	CCCGGG	1 cut(s)	481
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	392, 486
CviAII	CATG	4 cut(s)	10, 220, 280, 602
CviQI	GTAC	2 cut(s)	392, 486
DdeI	CTNAG	3 cut(s)	268, 420, 747
DpnI	GATC	4 cut(s)	17, 85, 228, 554
DpnII	GATC	4 cut(s)	15, 83, 226, 552
Eam1104I	CTCTTC	4 cut(s)	103, 134, 291, 296
EarI	CTCTTC	4 cut(s)	103, 134, 291, 296
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	2 cut(s)	444, 643
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	444, 643
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	4 cut(s)	13, 223, 283, 605
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	4 cut(s)	9, 219, 279, 601
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	26, 117, 498
FokI	GGATG	3 cut(s)	187, 537, 676
FriOI	GRGCYC	2 cut(s)	444, 643
Fsp4HI	GCNGC	3 cut(s)	26, 117, 498
FspBI	CTAG	5 cut(s)	92, 293, 468, 614, 791
GlaI	GCGC	3 cut(s)	291, 456, 458
GluI	GCNGC	3 cut(s)	26, 117, 498
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	756, 784
HapII	CCGG	1 cut(s)	482
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	3 cut(s)	292, 457, 459
Hin1II	CATG	4 cut(s)	13, 223, 283, 605
Hin6I	GCGC	3 cut(s)	290, 455, 457
HinP1I	GCGC	3 cut(s)	290, 455, 457
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	3 cut(s)	242, 692, 713
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	110, 127
Hpy188III	TCNNGA	2 cut(s)	71, 155
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	5 cut(s)	201, 217, 630, 692, 761
HpyCH4III	ACNGT	3 cut(s)	391, 628, 715
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	4 cut(s)	39, 81, 528, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	268, 420, 747
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	4 cut(s)	13, 223, 283, 605
HspAI	GCGC	3 cut(s)	290, 455, 457
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	15, 83, 226, 552
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	522
LpnPI	CCDG	5 cut(s)	42, 91, 168, 408, 495
Lsp1109I	GCAGC	2 cut(s)	12, 103
LweI	GCATC	4 cut(s)	48, 64, 407, 515
MaeI	CTAG	5 cut(s)	92, 293, 468, 614, 791
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	2 cut(s)	275, 701
MalI	GATC	4 cut(s)	17, 85, 228, 554
MboI	GATC	4 cut(s)	15, 83, 226, 552
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	444, 643
MluCI	AATT	2 cut(s)	208, 345
MnlI	CCTC	8 cut(s)	73, 78, 162, 329, 644, 661, 723, 767
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	482, 483
MunI	CAATTG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	72, 457
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	482, 483
NdeII	GATC	4 cut(s)	15, 83, 226, 552
NlaIII	CATG	4 cut(s)	13, 223, 283, 605
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	701
NruI	TCGCGA	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	176
PauI	GCGCGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	27, 118, 499
Ple19I	CGATCG	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	226
PteI	GCGCGC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	555
RruI	TCGCGA	1 cut(s)	72
RsaI	GTAC	2 cut(s)	393, 487
RsaNI	GTAC	2 cut(s)	392, 486
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	26, 117, 498
Sau3AI	GATC	4 cut(s)	15, 83, 226, 552
ScrFI	CCNGG	2 cut(s)	482, 483
SduI	GDGCHC	2 cut(s)	444, 643
SfaNI	GCATC	4 cut(s)	48, 64, 407, 515
SfcI	CTRYAG	2 cut(s)	79, 714
SfuI	TTCGAA	1 cut(s)	176
SmaI	CCCGGG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	208, 345
SseBI	AGGCCT	1 cut(s)	784
SsiI	CCGC	2 cut(s)	350, 497
SspMI	CTAG	5 cut(s)	92, 293, 468, 614, 791
SstI	GAGCTC	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	2 cut(s)	480, 481
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	391, 628, 715
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	4 cut(s)	176, 444, 555, 643
TasI	AATT	2 cut(s)	208, 345
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	386, 633
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	25, 116
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	2 cut(s)	17, 236
TspMI	CCCGGG	1 cut(s)	481
TspRI	CASTG	2 cut(s)	386, 633
XapI	RAATTY	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	481
XspI	CTAG	5 cut(s)	92, 293, 468, 614, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.