ATMG00850

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0001157
Physical Location & Seq
Forward (+)
235338 .. 235661
324 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00850.1

Sequence Viewer

Length: 324 bp
ATGAAAACGTGTTTGAGATGCCGCAAGGATTACCCCCAAAATGTGGCAGGGAACATGCTATCAACCTTAAGGAAGGAGCAGAACCAGTTAACATCCGTCCTTACCGGTATACATATACTCAGAAGGACGAGATTGAAAAATTGGTTAGGGGAGATGTTAGAAGCACGGATCATCCAGCCGAGCATCAGTCCATATTCAAGTCCAGTTTTGCTCGTCCAAAAGAAGGACGGAGGATGGCCTACGGCGCGTGGATTACCGAGCCTTTTACAAGCTCACGGTACCAGACAGGTACCCAATTCCCGTGATCGAGGAACTGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1

Protein Analysis

107

Amino Acids

12.01

Weight (kDa)

10.93

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 278, 289
AccB1I GGYRCC 2 cut(s) 278, 289
AccB7I CCANNNNNTGG 1 cut(s) 43
AccI GTMKAC 1 cut(s) 109
AccII CGCG 1 cut(s) 247
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 176
AfaI GTAC 2 cut(s) 280, 291
AfiI CCNNNNNNNGG 2 cut(s) 43, 223
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 136, 198
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 104
Asp718I GGTACC 2 cut(s) 278, 289
AspLEI GCGC 1 cut(s) 247
BanI GGYRCC 2 cut(s) 278, 289
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 280, 291
BmsI GCATC 2 cut(s) 8, 192
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 223
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 85, 203
BseGI GGATG 3 cut(s) 92, 171, 239
BseLI CCNNNNNNNGG 2 cut(s) 43, 223
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 85, 203
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 2 cut(s) 278, 289
BshTI ACCGGT 1 cut(s) 104
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 43, 223
BsnI GGCC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 168, 304
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 280, 291
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 278, 289
BspTI CTTAAG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 85, 203
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 2 cut(s) 168, 304
BssNAI GTATAC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 278, 316
BstAFI CTTAAG 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 3 cut(s) 92, 171, 239
BstFNI CGCG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 171, 307
BstMBI GATC 2 cut(s) 168, 304
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 58
BstUI CGCG 1 cut(s) 247
BstZ17I GTATAC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 92, 171, 239
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 2 cut(s) 279, 290
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 178, 238, 261, 272
CviKI_1 RGCY 4 cut(s) 178, 238, 261, 272
CviQI GTAC 2 cut(s) 279, 290
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 170, 306
DpnII GATC 2 cut(s) 168, 304
FaeI CATG 1 cut(s) 58
FaiI YATR 5 cut(s) 56, 110, 114, 116, 193
FatI CATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 3 cut(s) 79, 158, 246
Fsp4HI GCNGC 1 cut(s) 22
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 90, 110
Hpy188I TCNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 90, 110
HpyAV CCTTC 3 cut(s) 67, 117, 217
HpyCH4III ACNGT 2 cut(s) 278, 316
HpyCH4IV ACGT 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 245
KpnI GGTACC 2 cut(s) 282, 293
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 168, 304
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 33, 98, 118, 188, 216, 272, 295
LweI GCATC 2 cut(s) 8, 192
MaeII ACGT 1 cut(s) 8
MalI GATC 2 cut(s) 170, 306
MboI GATC 2 cut(s) 168, 304
MluCI AATT 2 cut(s) 139, 295
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 2 cut(s) 224, 302
MseI TTAA 2 cut(s) 68, 89
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 2 cut(s) 168, 304
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 280, 291
NmeAIII GCCGAG 1 cut(s) 204
NspI RCATGY 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 280, 291
RsaI GTAC 2 cut(s) 280, 291
RsaNI GTAC 2 cut(s) 279, 290
SaqAI TTAA 2 cut(s) 68, 89
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 168, 304
SetI ASST 4 cut(s) 11, 68, 274, 291
SfaNI GCATC 2 cut(s) 8, 192
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 139, 295
SsiI CCGC 1 cut(s) 22
TaaI ACNGT 2 cut(s) 278, 316
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 307
TasI AATT 2 cut(s) 139, 295
TauI GCSGC 1 cut(s) 24
Tru1I TTAA 2 cut(s) 68, 89
Tru9I TTAA 2 cut(s) 68, 89
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 85, 181, 243
Van91I CCANNNNNTGG 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 67
XceI RCATGY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.