RLG00000010853

L-threonine ammonia-lyase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
4808566 .. 4809112
547 bp
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UTR
Exon/CDS
Intron
RLM00000010853

Sequence Viewer

Length: 453 bp
ATGTTTTTGGGCGGCCTGAAACCAGCAATCCCCAACGATGTCAAAACCTTCAATCCTCTCACTTTGACAGAGGCACAAAAGCTGGCACGATGCTGTGAGGCTAAGCTTTCCGAATACCAGTCGACCTCCGACCTTCCCCCCAATCCTCCATACTCAACCACTTCCCCATTACCTTACCGTGCCAACCATACCTTGTCCTCACCTGCTACCACCCAACCACCTAACCCACCACAAGTACAACTTACCAAAACCCCGACCCATCGCATTCCCAGAATCCTTTCCACATCAGAACAACTTGAGAGAAGAGCAAAAGGTTTATGCTTTAATTGTGATGAGCAGTACACCCCCACCCACTCATGTAAACAACCATTCCTAGCCATACTGGAAGCACCTACTGCCACACCAAGTGACGAATCCTCTGACACTCCAGATTTTCCTACATTTGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

151

Amino Acids

16.43

Weight (kDa)

6.27

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 122
AciI CCGC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 2 cut(s) 237, 341
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 2 cut(s) 82, 106
AluI AGCT 2 cut(s) 82, 106
AoxI GGCC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 192
BanI GGYRCC 1 cut(s) 446
BccI CCATC 1 cut(s) 267
BfaI CTAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 448
BmsI GCATC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 118, 387
BseLI CCNNNNNNNGG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 118, 387
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 443
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 446
BsrI ACTGG 2 cut(s) 118, 387
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 236, 340
CviAII CATG 1 cut(s) 357
CviJI RGCY 5 cut(s) 15, 82, 101, 106, 377
CviKI_1 RGCY 5 cut(s) 15, 82, 101, 106, 377
CviQI GTAC 2 cut(s) 236, 340
DdeI CTNAG 1 cut(s) 102
DraIII CACNNNGTG 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
FaeI CATG 1 cut(s) 360
FaiI YATR 5 cut(s) 151, 189, 319, 358, 380
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 356
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 374
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 1 cut(s) 360
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 273, 413
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 3 cut(s) 123, 342, 362
Hpy188I TCNGA 4 cut(s) 112, 130, 289, 421
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 3 cut(s) 123, 342, 362
HpyAV CCTTC 2 cut(s) 58, 143
HpyCH4III ACNGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 360
LguI GCTCTTC 1 cut(s) 298
LpnPI CCDG 8 cut(s) 29, 36, 68, 131, 216, 283, 368, 441
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 407
MboII GAAGA 1 cut(s) 315
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 7 cut(s) 64, 66, 91, 136, 156, 208, 427
MroXI GAANNNNTTC 1 cut(s) 277
MseI TTAA 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 395
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 407
PaqCI CACCTGC 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 298
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 273, 413
PkrI GCNGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 448
RsaI GTAC 2 cut(s) 237, 341
RsaNI GTAC 2 cut(s) 236, 340
SalI GTCGAC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 122
TasI AATT 1 cut(s) 325
TatI WGTACW 2 cut(s) 235, 339
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 273, 413
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 277
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.