Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

19215745 .. 19216243

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15489.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGCAACAAGCAGACAAACACCGTTCTGAAAGGGAATTTTCAGTTGGTGACTGGGTTTACCTTCGTTTGCACCATTACCAGCAAAGCTCATTGGCAAAGCGCCCTTCCCATAAACTCTCACTGAAGTATTTTGGCCCATTCTTGGTTTTGGAGCGCATTGGTCCGGTCGCTTATCAATTGGATTTGCCATCTTCCTCAAAAGTTCATTCGATGTTCCATGTTTCCCTTATGAAATTGAGGATAGTGCGAAAAGAGAAAAAGAAATCAGTGTCTTACTGGTTAATTAAATGGAAGGGGATGCCGGAGGACGATGCAACTTGGGAATCGGCGTCGGCGATAGTGAGCCGCTTTCCTCAGTTCGGCAGCCATGGACGACTCGCCTCTCAAGGGGGCGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

135

Amino Acids

15.46

Weight (kDa)

10.09

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	17 - 79	4.2e-22	Tf2-1-like, SH3 domain
Chromo	PF00385	81 - 120	9.1e-09	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	349, 396
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	145, 362, 390
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	105, 159
AspS9I	GGNCC	2 cut(s)	137, 164
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	3 cut(s)	349, 367, 397
BlsI	GCNGC	3 cut(s)	350, 368, 398
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	137, 164
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	291, 304
BmuI	ACTGGG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 362, 390
Bse1I	ACTGG	2 cut(s)	59, 284
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	145, 362, 390
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	59, 284
BseXI	GCAGC	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	167, 305
BslI	CCNNNNNNNGG	3 cut(s)	145, 362, 390
BsnI	GGCC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	2 cut(s)	349, 396
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	59, 284
BssECI	CCNNGG	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	105, 159
BstMCI	CGRYCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	122, 276
CfoI	GCGC	2 cut(s)	105, 159
Cfr13I	GGNCC	2 cut(s)	137, 164
CseI	GACGC	1 cut(s)	321
CviAII	CATG	2 cut(s)	221, 371
CviJI	RGCY	4 cut(s)	90, 138, 348, 369
CviKI_1	RGCY	4 cut(s)	90, 138, 348, 369
DdeI	CTNAG	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	224, 374
FaiI	YATR	4 cut(s)	114, 222, 233, 372
FatI	CATG	2 cut(s)	220, 370
Fnu4HI	GCNGC	3 cut(s)	349, 367, 397
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	349, 367, 397
GlaI	GCGC	2 cut(s)	104, 158
GluI	GCNGC	3 cut(s)	349, 367, 397
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	167, 305
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	105, 159
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	224, 374
Hin6I	GCGC	2 cut(s)	103, 157
HinP1I	GCGC	2 cut(s)	103, 157
HinfI	GANTC	2 cut(s)	326, 378
HpaII	CCGG	2 cut(s)	167, 305
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	74, 117, 289
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	73, 317
HpyF3I	CTNAG	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	224, 374
HspAI	GCGC	2 cut(s)	103, 157
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	40, 95, 180, 265, 318
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	2 cut(s)	291, 304
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	186
MfeI	CAATTG	2 cut(s)	179, 400
MluCI	AATT	5 cut(s)	38, 179, 236, 285, 400
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	208, 234, 301, 366, 394
MseI	TTAA	2 cut(s)	284, 288
MspI	CCGG	2 cut(s)	167, 305
MunI	CAATTG	2 cut(s)	179, 400
NcoI	CCATGG	1 cut(s)	370
NlaIII	CATG	2 cut(s)	224, 374
NmuCI	GTSAC	1 cut(s)	50
PacI	TTAATTAA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	350, 368, 398
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	137, 164
SaqAI	TTAA	2 cut(s)	284, 288
SatI	GCNGC	3 cut(s)	349, 367, 397
Sau96I	GGNCC	2 cut(s)	137, 164
SchI	GAGTC	1 cut(s)	372
SetI	ASST	2 cut(s)	66, 92
SfaNI	GCATC	2 cut(s)	291, 304
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	5 cut(s)	38, 179, 236, 285, 400
SsiI	CCGC	2 cut(s)	349, 396
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	38, 179, 236, 285, 400
TauI	GCSGC	2 cut(s)	351, 399
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	284, 288
Tru9I	TTAA	2 cut(s)	284, 288
TscAI	CASTG	2 cut(s)	129, 276
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	17, 197, 248
TspRI	CASTG	2 cut(s)	129, 276
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.