Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

11421170 .. 11421689

Gene Structure 520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47388

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAGCAGCAAGCGGACCGCCACCGTACTGAAAGAGAATTCGCTGCAGGGGATTGGGTATTCTTGAAGCTCCATCCTTATAGACAGCATTCCTTGCTCAAGCATCCTTCCCATAAACTCTCTCCTAGATTTTATGGTCCTTTTCTCATCCAAGCAAAAGTCGGTAAAGTTGCTTATCGCCTGTCACTTCCTACCTCTTGCCGCCTTCATCCGGTTTTTCATGTTTCCCTCCTCAAGAAGAGAATTGGAGAAGGAACTCCTCTCACAGCCACACTGCCAGAATTTGATGATCAAGGGGAGTTGCTATGGCGTCCGGAGCGTGTGTTAGACATGGCTGTGATTAAGAAAAAGAAACGCAACACTACGCAATGGCTCATTCAATGGCACGGCCTCCCTGCTGTGGACGCTACTTGGGAGGACGCCCATACCATCAAGGCACGATTCCCCACCTTTGGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

153

Amino Acids

17.78

Weight (kDa)

10.1

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	17 - 80	9.6e-24	Tf2-1-like, SH3 domain
Chromo	PF00385	104 - 149	6e-07	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	3 cut(s)	14, 19, 202
AcsI	RAATTY	2 cut(s)	38, 281
AcyI	GRCGYC	2 cut(s)	310, 420
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	211, 400, 452
AgsI	TTSAA	2 cut(s)	67, 380
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	7, 44
ApoI	RAATTY	2 cut(s)	38, 281
AspS9I	GGNCC	2 cut(s)	16, 137
AvaII	GGWCC	2 cut(s)	16, 137
BanI	GGYRCC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	19, 31
BccI	CCATC	2 cut(s)	81, 437
BceAI	ACGGC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	3 cut(s)	8, 45, 202
BlsI	GCNGC	3 cut(s)	9, 46, 203
Bme18I	GGWCC	2 cut(s)	16, 137
BmgT120I	GGNCC	2 cut(s)	16, 137
BmiI	GGNNCC	1 cut(s)	457
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	2 cut(s)	83, 218
BsaHI	GRCGYC	2 cut(s)	310, 420
BsaWI	WCCGGW	2 cut(s)	211, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 400, 452
Bse3DI	GCAATG	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	313
BseGI	GGATG	4 cut(s)	73, 103, 147, 208
BseLI	CCNNNNNNNGG	3 cut(s)	211, 400, 452
BseMI	GCAATG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	221, 249
BseXI	GCAGC	2 cut(s)	19, 31
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	212, 314
BslI	CCNNNNNNNGG	3 cut(s)	211, 400, 452
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	3 cut(s)	14, 19, 202
BspANI	GGCC	1 cut(s)	390
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	374
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	2 cut(s)	310, 420
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	2 cut(s)	310, 420
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	73, 103, 147, 208
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 316, 404
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	19, 31
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	4 cut(s)	73, 103, 147, 208
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	16, 137
CpoI	CGGWCCG	1 cut(s)	16
CseI	GACGC	3 cut(s)	299, 413, 428
Csp6I	GTAC	1 cut(s)	27
CspI	CGGWCCG	1 cut(s)	16
CviAII	CATG	2 cut(s)	221, 331
CviJI	RGCY	5 cut(s)	70, 269, 335, 373, 390
CviKI_1	RGCY	5 cut(s)	70, 269, 335, 373, 390
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	16, 137
EcoRI	GAATTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	224, 334
FaiI	YATR	7 cut(s)	81, 114, 135, 222, 307, 332, 426
FatI	CATG	2 cut(s)	220, 330
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	8, 45, 202
FokI	GGATG	4 cut(s)	60, 90, 134, 195
Fsp4HI	GCNGC	3 cut(s)	8, 45, 202
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	8, 45, 202
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	2 cut(s)	212, 314
HgaI	GACGC	3 cut(s)	299, 413, 428
Hin1I	GRCGYC	2 cut(s)	310, 420
Hin1II	CATG	2 cut(s)	224, 334
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	212, 314
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	64, 235, 314
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	117, 215, 245
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 316, 404
Hsp92I	GRCGYC	2 cut(s)	310, 420
Hsp92II	CATG	2 cut(s)	224, 334
Kpn2I	TCCGGA	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	75, 316
LpnPI	CCDG	6 cut(s)	33, 194, 225, 291, 327, 408
Lsp1109I	GCAGC	2 cut(s)	19, 31
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	250
MluCI	AATT	3 cut(s)	38, 243, 281
MnlI	CCTC	6 cut(s)	205, 239, 242, 270, 401, 409
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	212, 314
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	94, 316, 404
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	224, 334
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	9, 46, 203
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	2 cut(s)	16, 137
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	335
Rsr2I	CGGWCCG	1 cut(s)	16
RsrII	CGGWCCG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	8, 45, 202
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	16, 137
SetI	ASST	3 cut(s)	72, 197, 452
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	16, 137
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	98, 233
SmoI	CTYRAG	2 cut(s)	98, 233
Sse9I	AATT	3 cut(s)	38, 243, 281
SsiI	CCGC	3 cut(s)	14, 19, 202
SspMI	CTAG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	26
TasI	AATT	3 cut(s)	38, 243, 281
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	7, 44
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	17, 197, 209
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	16, 137
XapI	RAATTY	2 cut(s)	38, 281
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.