Rh1AG114400
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001157
Physical Location & Seq
Reverse (-)
19675017 .. 19675325
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG114400.1

Sequence Viewer

Length: 309 bp
ATGGAGTTATATGAAAGATTTCATTCCTTGAAGCAGCTGAGCGCATCCCTGTTTGATAACCTCTCAATTCAGGTTGGACTAGATGAGACCAATGAGCAGCTGACCTCTCATTATCTTAGTGGATTACACCCATCCATTAGAGATGAAATGGGGGTTGTACGGCTGCACAACTTGGAAGAAGCTCGGCAATATGCCTTAATGGCAGAAAAAAGGCTACAACGTCATGGAGTTAGGAGATCTAACACTGGACGTTTTGATGGTGCTTGGACAAAGAATTCAACTACAGTTCGTGGGGTGCGTAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.76

Weight (kDa)

8.19

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 2 cut(s) 31, 279
AluBI AGCT 3 cut(s) 37, 100, 182
AluI AGCT 3 cut(s) 37, 100, 182
Alw26I GTCTC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 34, 97, 163
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 46, 109, 150
BccI CCATC 2 cut(s) 139, 251
BceAI ACGGC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 282
BglI GCCNNNNNGGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 236
BisI GCNGC 3 cut(s) 35, 98, 164
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 3 cut(s) 36, 99, 165
BmsI GCATC 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 44, 131
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 3 cut(s) 46, 109, 150
BsgI GTGCAG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 236
Bsp1720I GCTNAGC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 250
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 38, 116
BstF5I GGATG 2 cut(s) 44, 131
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 46, 109, 150
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BtsCI GGATG 2 cut(s) 44, 131
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 37, 100, 163, 182, 214
CviKI_1 RGCY 5 cut(s) 37, 100, 163, 182, 214
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 38, 116
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 274
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 10, 12, 192, 225
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 35, 98, 164
FokI GGATG 2 cut(s) 31, 118
Fsp4HI GCNGC 3 cut(s) 35, 98, 164
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 35, 98, 164
HhaI GCGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 220, 250
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 38, 116
HpySE526I ACGT 2 cut(s) 220, 250
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 3 cut(s) 56, 62, 231
Lsp1109I GCAGC 3 cut(s) 46, 109, 150
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 80
MaeII ACGT 2 cut(s) 220, 250
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 236
MluCI AATT 2 cut(s) 66, 274
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 71, 115
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 37, 100
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 236
NlaIII CATG 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 36, 99, 165
PsuI RGATCY 1 cut(s) 236
PvuII CAGCTG 2 cut(s) 37, 100
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 3 cut(s) 35, 98, 164
Sau3AI GATC 1 cut(s) 236
SetI ASST 8 cut(s) 39, 63, 75, 102, 107, 184, 223, 253
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 282
Sse9I AATT 2 cut(s) 66, 274
SspMI CTAG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 223, 253
TasI AATT 2 cut(s) 66, 274
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 3 cut(s) 34, 97, 163
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 11, 27, 159
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.