Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

14792227 .. 14792844

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACACCTTTTCAGGCAGTTTATGGCACTCCGCCCCCCTCTGTTTCGATGTATAGCCCTGGTTCTTCCTCGGTCCACGCGGTTGACCAGGCCTTGCAGGACCGCAACACCCTTCTTCAGCTCCTACGCTCTCACATGCTTGAGGCCCAAAACCGGATGAAACAGCAAGCCGATCGGCACCGGACCGAGCGAGAGTTCAACACCGGTGATTGGGTGTTTCTCAAACTCCATCCTTATCGTCAGCAGTCCGTCGTGAAACGCCCTTCTCACAAGCTCGCTCCCCGATTTTATGGTCCTTTCCGGGTTCGCGAGCGAGTCGGCACCGTGGCATACAAGCTGGACCTACCCCCTCGGTGCCGCATTCACCCTGTTTTCCATGTTTCTTTGCTTAAACGCCGTGTGGGCGAGGGTACCCCTCTTACTACTTCACTTCCGGAATTTGATGAGAATGGCGCTCTTTTGTGGACTCCAACCAAGGTTCTTGACATGGCGATCGTCCGTAAGAAGAAACGCAACGTGACTCAATGGTTGGTGCAGTGGTCAGGTCTTCCGGTTGAAGATGCCACCTGGGAAGATGCCCATACCATCAAACAGCGTTTTCCTACGTTCTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.7

Weight (kDa)

10.1

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	3.7e-25	Tf2-1-like, SH3 domain
Chromo	PF00385	157 - 201	1.7e-07	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	4 cut(s)	177, 320, 354, 410
AccII	CGCG	2 cut(s)	80, 309
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	4 cut(s)	32, 80, 103, 358
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	153, 210
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	199, 557
AjnI	CCWGG	3 cut(s)	58, 87, 566
AluBI	AGCT	3 cut(s)	121, 274, 337
AluI	AGCT	3 cut(s)	121, 274, 337
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	2 cut(s)	90, 144
ApoI	RAATTY	1 cut(s)	437
AsiGI	ACCGGT	1 cut(s)	203
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	6 cut(s)	73, 100, 145, 183, 293, 340
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	218, 356
AvaII	GGWCC	5 cut(s)	73, 100, 183, 293, 340
BanI	GGYRCC	4 cut(s)	177, 320, 354, 410
BbsI	GAAGAC	1 cut(s)	539
BccI	CCATC	2 cut(s)	237, 593
BceAI	ACGGC	1 cut(s)	381
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	3 cut(s)	60, 89, 568
BcnI	CCSGG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	402
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	4 cut(s)	60, 89, 302, 568
Bme18I	GGWCC	5 cut(s)	73, 100, 183, 293, 340
BmgT120I	GGNCC	6 cut(s)	73, 100, 145, 183, 293, 340
BmiI	GGNNCC	4 cut(s)	179, 322, 356, 412
BmrFI	CCNGG	4 cut(s)	60, 89, 302, 568
BmsI	GCATC	2 cut(s)	550, 565
BpiI	GAAGAC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	302
BsaJI	CCNNGG	6 cut(s)	58, 69, 324, 350, 474, 567
BsaWI	WCCGGW	5 cut(s)	153, 180, 203, 433, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 210
Bse118I	RCCGGY	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	3 cut(s)	60, 89, 568
BseDI	CCNNGG	6 cut(s)	58, 69, 324, 350, 474, 567
BseGI	GGATG	2 cut(s)	162, 229
BseLI	CCNNNNNNNGG	2 cut(s)	153, 210
BsgI	GTGCAG	1 cut(s)	554
Bsh1236I	CGCG	2 cut(s)	80, 309
Bsh1285I	CGRYCG	2 cut(s)	175, 495
BshFI	GGCC	2 cut(s)	92, 146
BshNI	GGYRCC	4 cut(s)	177, 320, 354, 410
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	175, 495
BsiSI	CCGG	6 cut(s)	154, 181, 204, 301, 434, 551
BslI	CCNNNNNNNGG	2 cut(s)	153, 210
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	92, 146
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	172, 492
Bsp68I	TCGCGA	1 cut(s)	309
BspACI	CCGC	4 cut(s)	32, 80, 103, 358
BspANI	GGCC	2 cut(s)	92, 146
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	2 cut(s)	80, 309
BspLI	GGNNCC	4 cut(s)	179, 322, 356, 412
BspT107I	GGYRCC	4 cut(s)	177, 320, 354, 410
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	6 cut(s)	58, 69, 324, 350, 474, 567
BssMI	GATC	2 cut(s)	172, 492
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	60, 89, 568
Bst4CI	ACNGT	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	168, 276, 311
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	162, 229
BstFNI	CGCG	2 cut(s)	80, 309
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	175, 495
BstMBI	GATC	2 cut(s)	172, 492
BstMCI	CGRYCG	2 cut(s)	175, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	3 cut(s)	60, 89, 568
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	4 cut(s)	58, 87, 300, 566
BstUI	CGCG	2 cut(s)	80, 309
BstV2I	GAAGAC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	92, 146
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	162, 229
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	542
BtuMI	TCGCGA	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	168, 276, 311
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	6 cut(s)	73, 100, 145, 183, 293, 340
CpoI	CGGWCCG	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	411
CspAI	ACCGGT	1 cut(s)	203
CspI	CGGWCCG	1 cut(s)	183
CviAII	CATG	3 cut(s)	136, 377, 487
CviJI	RGCY	7 cut(s)	57, 92, 121, 146, 170, 274, 337
CviKI_1	RGCY	7 cut(s)	57, 92, 121, 146, 170, 274, 337
CviQI	GTAC	1 cut(s)	411
DpnI	GATC	2 cut(s)	174, 494
DpnII	GATC	2 cut(s)	172, 492
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	92
Eco47I	GGWCC	5 cut(s)	73, 100, 183, 293, 340
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	3 cut(s)	58, 87, 566
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	3 cut(s)	139, 380, 490
FaiI	YATR	8 cut(s)	24, 54, 137, 291, 331, 378, 488, 582
FatI	CATG	3 cut(s)	135, 376, 486
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	2 cut(s)	169, 216
Fsp4HI	GCNGC	1 cut(s)	358
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	92, 146
HapII	CCGG	6 cut(s)	154, 181, 204, 301, 434, 551
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	139, 380, 490
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	315, 466, 520
HpaII	CCGG	6 cut(s)	154, 181, 204, 301, 434, 551
HphI	GGTGA	2 cut(s)	218, 356
Hpy166II	GTNNAC	3 cut(s)	76, 85, 465
Hpy188III	TCNNGA	4 cut(s)	253, 308, 434, 482
Hpy8I	GTNNAC	3 cut(s)	76, 85, 465
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	122, 273
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	516, 605
HpyCH4V	TGCA	2 cut(s)	97, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	516, 605
Hsp92II	CATG	3 cut(s)	139, 380, 490
HspAI	GCGC	1 cut(s)	453
Kpn2I	TCCGGA	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	172, 492
LmnI	GCTCC	2 cut(s)	126, 283
LweI	GCATC	2 cut(s)	550, 565
MaeII	ACGT	2 cut(s)	516, 605
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	2 cut(s)	174, 494
MboI	GATC	2 cut(s)	172, 492
MboII	GAAGA	6 cut(s)	57, 107, 517, 539, 569, 584
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	3 cut(s)	324, 460, 514
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	6 cut(s)	49, 79, 136, 360, 400, 426
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	390
MspI	CCGG	6 cut(s)	154, 181, 204, 301, 434, 551
MspR9I	CCNGG	4 cut(s)	60, 89, 302, 568
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	3 cut(s)	60, 89, 568
MvnI	CGCG	2 cut(s)	80, 309
MwoI	GCNNNNNNNGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	2 cut(s)	172, 492
NlaIII	CATG	3 cut(s)	139, 380, 490
NlaIV	GGNNCC	4 cut(s)	179, 322, 356, 412
NmuCI	GTSAC	1 cut(s)	517
NruI	TCGCGA	1 cut(s)	309
NspI	RCATGY	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	359
Ple19I	CGATCG	2 cut(s)	175, 495
PleI	GAGTC	3 cut(s)	323, 460, 514
PpsI	GAGTC	3 cut(s)	323, 460, 514
Psp6I	CCWGG	3 cut(s)	58, 87, 566
PspGI	CCWGG	3 cut(s)	58, 87, 566
PspN4I	GGNNCC	4 cut(s)	179, 322, 356, 412
PspPI	GGNCC	6 cut(s)	73, 100, 145, 183, 293, 340
PvuI	CGATCG	2 cut(s)	175, 495
RruI	TCGCGA	1 cut(s)	309
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
Rsr2I	CGGWCCG	1 cut(s)	183
RsrII	CGGWCCG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	172, 492
Sau96I	GGNCC	6 cut(s)	73, 100, 145, 183, 293, 340
SchI	GAGTC	3 cut(s)	324, 460, 514
ScrFI	CCNGG	4 cut(s)	60, 89, 302, 568
SfaNI	GCATC	2 cut(s)	550, 565
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	5 cut(s)	73, 100, 183, 293, 340
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	437
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	4 cut(s)	32, 80, 103, 358
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	4 cut(s)	58, 87, 300, 566
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	519, 608
TaqI	TCGA	1 cut(s)	47
TaqII	GACCGA	2 cut(s)	61, 200
TasI	AATT	1 cut(s)	437
TauI	GCSGC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	238, 488
TspRI	CASTG	1 cut(s)	542
VpaK11BI	GGWCC	5 cut(s)	73, 100, 183, 293, 340
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.