Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

54251407 .. 54252060

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCCCTTTTCAAGCCCTCTATGGCATTCCTCCACCGGCGGTCCAGCGCTACCTTCCCGGCTCCACCGCGGTTCATGCGGTCGACCTGGCTCTCCGTGACCGTGATGCTCTTCTACAGTCTCTCAAGCTGAACATGGCTCTCGCCCAAAATCGGATGAAACAACACTCCGACAAACAGAGGACTGAACGCGAATTTGAAATTGGGGATTGGGTTTTCCTCAAATTGCTCCCATATCGCCAGCAATCGCTCATCAAACGATCCTCCCACAAACTCTCTCCTCGCTTCTACGGGCCTTTCAAGATTCTTGATCGGATAGGAAGTGTGGCATATCGTCTGGATCTGCCGGCGTCGTCCAAAATCCATCCGGTCTTCCACGTTTCACTCTTGAAGAAACGCATCGGCGACTCCGTGCCCATATCTCAGACCCTCCCTCAGTTCAACACAAAAGGAGAGCCTATCTGGGTTCCTGAACGTGTGTTGGATATGTCTGTGACACACAAGAAAAAACGGCCCATTACCCAGTGGCTTATTCAATGGGCTGGGCTACCTAAGGAGGACGCAACTTGGGAGGAAGCCCATGCCATCATGGCCCGTTTTCCTGCTTTCGGCAACCGTGGTCGGCTTGCGACTCAAGGGGGCGGGACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

217

Amino Acids

24.66

Weight (kDa)

10.16

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	1e-26	Tf2-1-like, SH3 domain
Chromo	PF00385	155 - 199	7.5e-08	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	2 cut(s)	71, 192
AciI	CCGC	5 cut(s)	41, 69, 71, 80, 642
AclWI	GGATC	2 cut(s)	255, 348
AcsI	RAATTY	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	153, 608
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	6 cut(s)	14, 200, 301, 391, 442, 536
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	255, 348
Aor51HI	AGCGCT	1 cut(s)	50
AoxI	GGCC	4 cut(s)	3, 293, 512, 591
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	5 cut(s)	4, 43, 293, 513, 592
AsuC2I	CCSGG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	364
BccI	CCATC	2 cut(s)	372, 593
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	60, 89
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	5 cut(s)	4, 43, 293, 513, 592
BmiI	GGNNCC	3 cut(s)	6, 64, 468
BmrFI	CCNGG	2 cut(s)	60, 89
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	2 cut(s)	97, 408
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	364
BpuEI	CTTGAG	2 cut(s)	110, 618
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	69, 616
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 608
Bse118I	RCCGGY	2 cut(s)	37, 346
Bse1I	ACTGG	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	69, 616
BseGI	GGATG	2 cut(s)	162, 364
BseLI	CCNNNNNNNGG	2 cut(s)	153, 608
BseMII	CTCAG	2 cut(s)	437, 449
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	71, 192
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	5, 295, 514, 593
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	38, 60, 347, 368
BslI	CCNNNNNNNGG	2 cut(s)	153, 608
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	5, 295, 514, 593
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	260, 310, 340
BspACI	CCGC	5 cut(s)	41, 69, 71, 80, 642
BspANI	GGCC	4 cut(s)	5, 295, 514, 593
BspCNI	CTCAG	2 cut(s)	436, 448
BspFNI	CGCG	2 cut(s)	71, 192
BspLI	GGNNCC	3 cut(s)	6, 64, 468
BspPI	GGATC	2 cut(s)	255, 348
BspQI	GCTCTTC	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	37, 346
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	2 cut(s)	37, 346
BssECI	CCNNGG	2 cut(s)	69, 616
BssMI	GATC	3 cut(s)	260, 310, 340
BssNI	GRCGYC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	104, 120, 617
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	350
BstC8I	GCNNGC	3 cut(s)	242, 348, 627
BstDEI	CTNAG	3 cut(s)	423, 435, 552
BstDSI	CCRYGG	2 cut(s)	69, 616
BstF5I	GGATG	2 cut(s)	162, 364
BstFNI	CGCG	2 cut(s)	71, 192
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	263, 313, 343
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	260, 310, 340
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 590
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	58, 87
BstSFI	CTRYAG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	2 cut(s)	71, 192
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	5, 295, 514, 593
BtgI	CCRYGG	2 cut(s)	69, 616
BtsCI	GGATG	2 cut(s)	162, 364
BtsIMutI	CAGTG	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	242, 348, 627
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	2 cut(s)	37, 346
Cfr13I	GGNCC	5 cut(s)	4, 43, 293, 513, 592
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	2 cut(s)	339, 569
CviAII	CATG	4 cut(s)	77, 136, 581, 589
DdeI	CTNAG	3 cut(s)	423, 435, 552
DpnI	GATC	3 cut(s)	262, 312, 342
DpnII	GATC	3 cut(s)	260, 310, 340
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	43
Eco47III	AGCGCT	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	80, 139, 584, 592
FaiI	YATR	9 cut(s)	24, 78, 137, 235, 331, 419, 488, 582, 590
FatI	CATG	4 cut(s)	76, 135, 580, 588
FauI	CCCGC	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	84
FokI	GGATG	2 cut(s)	169, 351
GlaI	GCGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	4 cut(s)	5, 295, 514, 593
HapII	CCGG	4 cut(s)	38, 60, 347, 368
HgaI	GACGC	2 cut(s)	339, 569
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	80, 139, 584, 592
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	304, 407, 631
HpaII	CCGG	4 cut(s)	38, 60, 347, 368
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	156, 172, 315, 426
Hpy188III	TCNNGA	5 cut(s)	301, 308, 338, 388, 470
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	104, 120, 617
HpyCH4IV	ACGT	2 cut(s)	378, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 590
HpyF3I	CTNAG	3 cut(s)	423, 435, 552
HpySE526I	ACGT	2 cut(s)	378, 475
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	80, 139, 584, 592
HspAI	GCGC	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	260, 310, 340
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	68, 234
LweI	GCATC	2 cut(s)	97, 408
MaeII	ACGT	2 cut(s)	378, 475
MaeIII	GTNAC	2 cut(s)	98, 493
MalI	GATC	3 cut(s)	262, 312, 342
MboI	GATC	3 cut(s)	260, 310, 340
MboII	GAAGA	3 cut(s)	104, 364, 403
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	3 cut(s)	194, 201, 224
MlyI	GAGTC	2 cut(s)	401, 625
MmeI	TCCRAC	2 cut(s)	195, 462
MroNI	GCCGGC	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	4 cut(s)	38, 60, 347, 368
MspR9I	CCNGG	2 cut(s)	60, 89
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	71, 192
MwoI	GCNNNNNNNGC	2 cut(s)	77, 590
NaeI	GCCGGC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	260, 310, 340
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	4 cut(s)	80, 139, 584, 592
NlaIV	GGNNCC	3 cut(s)	6, 64, 468
NmuCI	GTSAC	2 cut(s)	98, 493
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	401, 625
PpsI	GAGTC	2 cut(s)	401, 625
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	6, 64, 468
PspPI	GGNCC	5 cut(s)	4, 43, 293, 513, 592
PsuI	RGATCY	1 cut(s)	340
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	260, 310, 340
Sau96I	GGNCC	5 cut(s)	4, 43, 293, 513, 592
SchI	GAGTC	2 cut(s)	401, 625
ScrFI	CCNGG	2 cut(s)	60, 89
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	6 cut(s)	57, 90, 132, 381, 478, 553
SfaNI	GCATC	2 cut(s)	97, 408
SfcI	CTRYAG	1 cut(s)	116
Sfr303I	CCGCGG	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	125, 633
SmoI	CTYRAG	2 cut(s)	125, 633
Sse9I	AATT	3 cut(s)	194, 201, 224
SsiI	CCGC	5 cut(s)	41, 69, 71, 80, 642
StyD4I	CCNGG	2 cut(s)	58, 87
TaaI	ACNGT	3 cut(s)	104, 120, 617
TaiI	ACGT	2 cut(s)	381, 478
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	194, 201, 224
TfiI	GAWTC	1 cut(s)	304
TscAI	CASTG	1 cut(s)	530
TseFI	GTSAC	2 cut(s)	98, 493
Tsp45I	GTSAC	2 cut(s)	98, 493
TspDTI	ATGAA	2 cut(s)	65, 173
TspGWI	ACGGA	2 cut(s)	86, 400
TspRI	CASTG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.