Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

462923 .. 463540

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACTCCATTCGAAGCTCTCTACGGATACCCACCGCCTACGGTTTCAATGTATTTACCGGGCACAACTCCCGTGCAAGCAGTCGACTCTACTCTCCAGAAGCGCGATGCTCTCCTTCGGTCCCTGAAATCCCACATGACAATTGCTCAAAACAGAATGAAACAACAGGCTGATCTTCACCGTACTGAAAGAGAATTTGCCATCGGCGATTGGGTTTACTTGAAACTCCACCCATATCGTCAACAATCTCTGGTGAAGCGCCCGTCCCACAAATTAGCCCCACGATACTATGGGCCATTCAAAATCACAGAAAGAATTGGGAAAGTGGCTTACCGTCTTGATCTCCCCGCACAATCTCGCATTCACCCAGTCTTTCATGTTTCCCTGTTGAAGCAACGTGTGGGCGACATCACGATCTCTTCCCCTACTCTTCCACCTTTCGATCACAGTGGCGAACTGCTATGGACTCTAGAGGCTGTGCTTGACATGCAGGTGGTCAAGAAGAAGAAATCTCAGATAACTCAGTGGCTCATCAAGTGGGCCGGCTTGCCAGTTGAGGATGCCACCTGGGAGTCCGCTCAGGACATTGTCGCTCGTTTTCCTTCCTTTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.5

Weight (kDa)

9.75

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	5.5e-26	Tf2-1-like, SH3 domain
Integrase_p58_C	PF22938	98 - 131	1e-05	Integrase p58, C-terminal domain
Chromo	PF00385	158 - 201	7.4e-10	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	35, 348, 576
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	48, 223, 301, 391
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	293, 540
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	105, 261
AspS9I	GGNCC	3 cut(s)	120, 293, 540
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	170, 265, 356
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	65
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	568
BciVI	GTATCC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	60, 568
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	120, 293, 540
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	60, 568
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	97, 550
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	368, 551
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	3 cut(s)	527, 536, 593
BseNI	ACTGG	2 cut(s)	368, 551
BseSI	GKGCMC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	295, 542
BsiSI	CCGG	2 cut(s)	59, 543
BslFI	GGGAC	2 cut(s)	106, 250
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	106, 250
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	295, 542
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	172, 340, 414, 442
BspACI	CCGC	3 cut(s)	35, 348, 576
BspANI	GGCC	2 cut(s)	295, 542
BspCNI	CTCAG	3 cut(s)	526, 535, 592
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	368, 551
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	4 cut(s)	172, 340, 414, 442
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	4 cut(s)	43, 182, 335, 449
Bst6I	CTCTTC	2 cut(s)	424, 435
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	78, 544, 548
BstDEI	CTNAG	3 cut(s)	513, 522, 579
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	2 cut(s)	105, 261
BstKTI	GATC	4 cut(s)	175, 343, 417, 445
BstMBI	GATC	4 cut(s)	172, 340, 414, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	58, 566
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	295, 542
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	454, 530
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	78, 544, 548
CfoI	GCGC	2 cut(s)	105, 261
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	3 cut(s)	120, 293, 540
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	136, 377, 487
CviJI	RGCY	9 cut(s)	17, 170, 278, 295, 329, 476, 529, 542, 546
CviKI_1	RGCY	9 cut(s)	17, 170, 278, 295, 329, 476, 529, 542, 546
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	513, 522, 579
DpnI	GATC	4 cut(s)	174, 342, 416, 444
DpnII	GATC	4 cut(s)	172, 340, 414, 442
Eam1104I	CTCTTC	2 cut(s)	424, 435
EarI	CTCTTC	2 cut(s)	424, 435
Eco47I	GGWCC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	566
FaeI	CATG	3 cut(s)	139, 380, 490
FaiI	YATR	6 cut(s)	137, 235, 291, 378, 463, 488
FaqI	GGGAC	2 cut(s)	106, 250
FatI	CATG	3 cut(s)	135, 376, 486
FauI	CCCGC	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	84
FokI	GGATG	1 cut(s)	572
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	104, 260
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	295, 542
HapII	CCGG	2 cut(s)	59, 543
HhaI	GCGC	2 cut(s)	105, 261
Hin1II	CATG	3 cut(s)	139, 380, 490
Hin6I	GCGC	2 cut(s)	103, 259
HinP1I	GCGC	2 cut(s)	103, 259
HincII	GTYRAC	2 cut(s)	85, 242
HindII	GTYRAC	2 cut(s)	85, 242
HinfI	GANTC	4 cut(s)	4, 86, 466, 572
HpaII	CCGG	2 cut(s)	59, 543
HphI	GGTGA	3 cut(s)	170, 265, 356
Hpy166II	GTNNAC	3 cut(s)	85, 217, 242
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	6 cut(s)	97, 338, 412, 470, 499, 581
Hpy8I	GTNNAC	3 cut(s)	85, 217, 242
HpyAV	CCTTC	2 cut(s)	125, 612
HpyCH4III	ACNGT	4 cut(s)	43, 182, 335, 449
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	76, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	3 cut(s)	513, 522, 579
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	139, 380, 490
HspAI	GCGC	2 cut(s)	103, 259
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	172, 340, 414, 442
LweI	GCATC	2 cut(s)	97, 550
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	397
MalI	GATC	4 cut(s)	174, 342, 416, 444
MbiI	CCGCTC	1 cut(s)	578
MboI	GATC	4 cut(s)	172, 340, 414, 442
MboII	GAAGA	5 cut(s)	167, 411, 422, 514, 517
MfeI	CAATTG	2 cut(s)	141, 613
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	5 cut(s)	141, 194, 272, 315, 613
MlyI	GAGTC	3 cut(s)	80, 460, 581
MnlI	CCTC	2 cut(s)	466, 550
MroNI	GCCGGC	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	2 cut(s)	59, 543
MspR9I	CCNGG	2 cut(s)	60, 568
MunI	CAATTG	2 cut(s)	141, 613
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	487
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	172, 340, 414, 442
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	3 cut(s)	139, 380, 490
NlaIV	GGNNCC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	544
PflFI	GACNNNGTC	1 cut(s)	587
PleI	GAGTC	3 cut(s)	80, 460, 580
PpsI	GAGTC	3 cut(s)	80, 460, 580
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	3 cut(s)	120, 293, 540
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	83
Sau3AI	GATC	4 cut(s)	172, 340, 414, 442
Sau96I	GGNCC	3 cut(s)	120, 293, 540
SchI	GAGTC	3 cut(s)	80, 460, 581
ScrFI	CCNGG	2 cut(s)	60, 568
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	19, 400, 439, 495, 569
SfaNI	GCATC	2 cut(s)	97, 550
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	5 cut(s)	141, 194, 272, 315, 613
SsiI	CCGC	3 cut(s)	35, 348, 576
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	58, 566
TaaI	ACNGT	4 cut(s)	43, 182, 335, 449
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	12, 84, 441
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	141, 194, 272, 315, 613
TscAI	CASTG	2 cut(s)	454, 530
TspDTI	ATGAA	2 cut(s)	173, 365
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	454, 530
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.