Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

4423388 .. 4424011

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACACCGTTTCAAGCAGTATATGGTACGCCACCTCCCTTTGTTTCTATGTATGTTCCTGGCTCCACTTCAGTGCAGGCAGTGGATCATGCTCTTCAAGATCGTAATGTTCTGCTCCAATTACTCAAGGACCACATGGTTGCTGCCCAAAATAGGATGAAGACCCAAGCTGATCATCATAGGACAGAACGAGAATTCAATGTTGGTGAATGGGTTTTTCTCAAGTTACAACCATATCGCCAGCGTTCCCTAGTCAAAAGACCCTCTCACAAGCTTTCTCCTCGCTACTACGGACCATTTATGATCACAAACCGCATTGGCAAAGTGGCGTACAAACTTGACTTGCCACCTCCATGCCGCATTCACCCAATCTTCCATGTCTCACTCCTAAAGAAGCGTATCGGTGATGGCATTCCATTGACTACATCCTTACCAGACTTTGATGATCAAGGCGAACTCTTGTGGCGTCCGGAACGGATCCTAGACATGGCTGTGTCTCACAGAAAGAAGAGAAATGTCACCCAATGGCTTGTACAATGGGCTGGACTTCCTGCTGCGGATGCCACTTGGGAGGAAGCTCACACCATCAAGCAACGTTTTCCTTCGTTTTGTGCCCGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

207

Amino Acids

23.9

Weight (kDa)

9.91

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	8.7e-24	Tf2-1-like, SH3 domain
Chromo	PF00385	156 - 201	9.4e-08	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	3 cut(s)	313, 358, 557
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	3 cut(s)	93, 472, 485
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	3 cut(s)	28, 332, 534
AfiI	CCNNNNNNNGG	2 cut(s)	153, 487
AgsI	TTSAA	3 cut(s)	14, 98, 199
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	170, 274, 578
AluI	AGCT	3 cut(s)	170, 274, 578
Alw26I	GTCTC	2 cut(s)	385, 501
AlwI	GGATC	3 cut(s)	93, 472, 485
Ama87I	CYCGRG	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	143, 554
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	130, 293
AsuHPI	GGTGA	4 cut(s)	218, 356, 416, 511
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	2 cut(s)	130, 293
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	130, 541
BccI	CCATC	2 cut(s)	401, 593
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	3 cut(s)	172, 303, 445
BcoDI	GTCTC	2 cut(s)	385, 501
BfaI	CTAG	2 cut(s)	251, 482
BisI	GCNGC	3 cut(s)	144, 358, 555
BlsI	GCNGC	3 cut(s)	145, 359, 556
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	130, 293
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	130, 293
BmiI	GGNNCC	2 cut(s)	64, 479
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	110, 206
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 487
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	3 cut(s)	162, 425, 565
BseLI	CCNNNNNNNGG	2 cut(s)	153, 487
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	130, 541
BsgI	GTGCAG	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	153, 487
BsmAI	GTCTC	2 cut(s)	385, 501
BsmI	GAATGC	2 cut(s)	360, 411
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
BspACI	CCGC	3 cut(s)	313, 358, 557
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	64, 479
BspPI	GGATC	3 cut(s)	93, 472, 485
BspQI	GCTCTTC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
BssNI	GRCGYC	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	99, 503
BstACI	GRCGYC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	78, 242
BstF5I	GGATG	3 cut(s)	162, 425, 565
BstKTI	GATC	6 cut(s)	88, 103, 175, 306, 448, 480
BstMAI	GTCTC	2 cut(s)	385, 501
BstMBI	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	130, 541
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	162, 425, 565
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	78, 87
Cac8I	GCNNGC	2 cut(s)	78, 242
Cfr13I	GGNCC	2 cut(s)	130, 293
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	3 cut(s)	27, 331, 533
CviAII	CATG	5 cut(s)	89, 136, 354, 377, 487
CviJI	RGCY	7 cut(s)	63, 170, 274, 491, 529, 542, 578
CviKI_1	RGCY	7 cut(s)	63, 170, 274, 491, 529, 542, 578
CviQI	GTAC	3 cut(s)	27, 331, 533
DpnI	GATC	6 cut(s)	87, 102, 174, 305, 447, 479
DpnII	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
Eam1104I	CTCTTC	2 cut(s)	99, 503
EarI	CTCTTC	2 cut(s)	99, 503
Eco47I	GGWCC	2 cut(s)	130, 293
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	5 cut(s)	92, 139, 357, 380, 490
FatI	CATG	5 cut(s)	88, 135, 353, 376, 486
FbaI	TGATCA	3 cut(s)	172, 303, 445
Fnu4HI	GCNGC	3 cut(s)	144, 358, 555
FokI	GGATG	3 cut(s)	169, 412, 572
Fsp4HI	GCNGC	3 cut(s)	144, 358, 555
FspBI	CTAG	2 cut(s)	251, 482
GluI	GCNGC	3 cut(s)	144, 358, 555
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	5 cut(s)	92, 139, 357, 380, 490
HindIII	AAGCTT	1 cut(s)	272
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	4 cut(s)	218, 356, 416, 511
Hpy188III	TCNNGA	2 cut(s)	98, 470
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	595
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	5 cut(s)	92, 139, 357, 380, 490
Kpn2I	TCCGGA	1 cut(s)	469
Ksp22I	TGATCA	3 cut(s)	172, 303, 445
Kzo9I	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	68, 120
LpnPI	CCDG	8 cut(s)	45, 62, 72, 254, 447, 483, 528, 564
Lsp1109I	GCAGC	2 cut(s)	130, 541
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	251, 482
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	2 cut(s)	225, 517
MalI	GATC	6 cut(s)	87, 102, 174, 305, 447, 479
MboI	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
MboII	GAAGA	4 cut(s)	86, 172, 364, 520
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	2 cut(s)	119, 194
MnlI	CCTC	6 cut(s)	45, 274, 291, 360, 565, 611
MroI	TCCGGA	1 cut(s)	469
MslI	CAYNNNNRTG	3 cut(s)	71, 352, 491
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	2 cut(s)	360, 411
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	560
NdeII	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
NlaIII	CATG	5 cut(s)	92, 139, 357, 380, 490
NlaIV	GGNNCC	2 cut(s)	64, 479
NmuCI	GTSAC	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	2 cut(s)	360, 411
PkrI	GCNGC	3 cut(s)	145, 359, 556
Psp1406I	AACGTT	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	64, 479
PspPI	GGNCC	2 cut(s)	130, 293
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	3 cut(s)	28, 332, 534
RsaNI	GTAC	3 cut(s)	27, 331, 533
RseI	CAYNNNNRTG	3 cut(s)	71, 352, 491
SapI	GCTCTTC	1 cut(s)	99
SatI	GCNGC	3 cut(s)	144, 358, 555
Sau3AI	GATC	6 cut(s)	85, 100, 172, 303, 445, 477
Sau96I	GGNCC	2 cut(s)	130, 293
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	616
SetI	ASST	6 cut(s)	37, 172, 276, 352, 580, 598
SfaNI	GCATC	1 cut(s)	550
SinI	GGWCC	2 cut(s)	130, 293
SmiMI	CAYNNNNRTG	3 cut(s)	71, 352, 491
SmlI	CTYRAG	2 cut(s)	125, 221
SmoI	CTYRAG	2 cut(s)	125, 221
Sse9I	AATT	2 cut(s)	119, 194
SsiI	CCGC	3 cut(s)	313, 358, 557
SspMI	CTAG	2 cut(s)	251, 482
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	598
TasI	AATT	2 cut(s)	119, 194
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	1 cut(s)	360
TscAI	CASTG	2 cut(s)	78, 87
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	143, 554
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	306, 490
TspRI	CASTG	2 cut(s)	78, 87
VpaK11BI	GGWCC	2 cut(s)	130, 293
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	251, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.