Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

22266503 .. 22266781

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGTTATATGAAAGATTTCATTCCTTGAAGCAGCTGAGCGCATCCCTATTTGATAACCTCTCAATTCAGGTTGGACTAGATGAGACCAATGAGCAGCTGACCTCTCATTATCTTAGTGGATTACACCCATCCATTAGAGATGAAATGGGGGTTGTACGGCTATACAATTTGGAAGAAGCTCAGCAATATGCCTTAATGGCAGAAAAAAAGCTACAACGTCATGGAGTTAGGAGGTCTAACACTGGACGTTTTGATGGTGCTTGGCCAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.66

Weight (kDa)

6.4

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	266
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	4 cut(s)	37, 100, 182, 214
AluI	AGCT	4 cut(s)	37, 100, 182, 214
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	34, 97
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	46, 109
BccI	CCATC	2 cut(s)	139, 251
BceAI	ACGGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	35, 98
BlpI	GCTNAGC	2 cut(s)	38, 183
BlsI	GCNGC	2 cut(s)	36, 99
BmsI	GCATC	1 cut(s)	53
Bpu1102I	GCTNAGC	2 cut(s)	38, 183
BsaI	GGTCTC	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	44, 131
BseMII	CTCAG	2 cut(s)	29, 197
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	46, 109
BshFI	GGCC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	1 cut(s)	80
Bsp1720I	GCTNAGC	2 cut(s)	38, 183
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	30, 196
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	38, 116, 183
BstF5I	GGATG	2 cut(s)	44, 131
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	46, 109
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	44, 131
BtsIMutI	CAGTG	1 cut(s)	243
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	6 cut(s)	37, 100, 163, 182, 214, 268
CviKI_1	RGCY	6 cut(s)	37, 100, 163, 182, 214, 268
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	38, 116, 183
EaeI	YGGCCR	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	227
FaiI	YATR	5 cut(s)	10, 12, 166, 192, 225
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	35, 98
FokI	GGATG	2 cut(s)	31, 118
Fsp4HI	GCNGC	2 cut(s)	35, 98
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	35, 98
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HpyCH4IV	ACGT	2 cut(s)	220, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	3 cut(s)	38, 116, 183
HpySE526I	ACGT	2 cut(s)	220, 250
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	42
LpnPI	CCDG	2 cut(s)	56, 231
Lsp1109I	GCAGC	2 cut(s)	46, 109
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	220, 250
MboII	GAAGA	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	3 cut(s)	66, 169, 274
MluNI	TGGCCA	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	71, 115, 228
Mox20I	TGGCCA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	268
MspA1I	CMGCKG	2 cut(s)	37, 100
MwoI	GCNNNNNNNGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	36, 99
PvuII	CAGCTG	2 cut(s)	37, 100
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	35, 98
SfaNI	GCATC	1 cut(s)	53
SgeI	CNNG	5 cut(s)	40, 83, 92, 236, 258
Sse9I	AATT	3 cut(s)	66, 169, 274
SspMI	CTAG	1 cut(s)	80
TaiI	ACGT	2 cut(s)	223, 253
TasI	AATT	3 cut(s)	66, 169, 274
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	34, 97
TspDTI	ATGAA	3 cut(s)	11, 27, 159
TspRI	CASTG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.