Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

18277104 .. 18277721

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACCCCATTTCAGGCTGTGTACGGCACACCACCACCAGCAATTTCATCCTATCTTCCCGGTTCTACCTCCGTCAACGCTGTGGACTGTGCTCTAAAGAATCGGGATGCTCTGCTCCAATTGCAGAAAATCCACATGAATCAAGCTCAGAACCGTATGAAGCAGCAAGCGGACCGCCAACGTACTGAAAGAGAATTTGCTGCAGGGGATTGGGTATTCTTGAAGCTCCATCCTTATAGACAGCGTTCCTTGCTCAAGCATCCTTCCCATAAACTCTCTCCTAGATTTTATGGTCCTTTTATCATCCAAGCAAAAGTCGGTAAAGTTGCTTATCGCCTGTCACTTCCTACCTCTTGCCGCCTTCATCCGGTTTTTCATGTTTCCTTTCTCAAGAAGAGAATTGGAGAAGGAACTCCTCTCACAGCCACACTGCCAGAATTTGATGATCAAGGGGAGTTGCTATGGCGTCCGGAGCGTGTGTTAGACATGGCTGTGATTAAGAAAAAGAAACGCAACACTACGCAATGGCTCATTCAATGGCACGGCCTCCCTGCTGCGGACGCTACTTGGGAGGACGCCCACACCATTAAGGCACGCTTCCCCACCTTTGGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.44

Weight (kDa)

10.08

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	4.4e-23	Tf2-1-like, SH3 domain
Chromo	PF00385	156 - 201	2.6e-07	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	4 cut(s)	170, 175, 358, 557
AcsI	RAATTY	2 cut(s)	194, 437
AcyI	GRCGYC	2 cut(s)	466, 576
AfaI	GTAC	2 cut(s)	23, 184
AfiI	CCNNNNNNNGG	4 cut(s)	13, 367, 556, 608
AgsI	TTSAA	2 cut(s)	223, 536
AluBI	AGCT	2 cut(s)	146, 226
AluI	AGCT	2 cut(s)	146, 226
Alw21I	GWGCWC	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	163, 200, 554
ApoI	RAATTY	2 cut(s)	194, 437
AspS9I	GGNCC	2 cut(s)	172, 293
AsuC2I	CCSGG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	172, 293
BanI	GGYRCC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	175, 187, 541
BccI	CCATC	1 cut(s)	237
BceAI	ACGGC	2 cut(s)	40, 559
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	4 cut(s)	164, 201, 358, 555
BlsI	GCNGC	4 cut(s)	165, 202, 359, 556
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	172, 293
BmgT120I	GGNCC	2 cut(s)	172, 293
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	97, 268
BpuEI	CTTGAG	2 cut(s)	239, 374
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	466, 576
BsaWI	WCCGGW	2 cut(s)	367, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 367, 556, 608
Bse3DI	GCAATG	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	6 cut(s)	47, 112, 229, 259, 303, 364
BseLI	CCNNNNNNNGG	4 cut(s)	13, 367, 556, 608
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	175, 187, 541
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	60, 368, 470
BslI	CCNNNNNNNGG	4 cut(s)	13, 367, 556, 608
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	4 cut(s)	170, 175, 358, 557
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	530
BssMI	GATC	1 cut(s)	445
BssNI	GRCGYC	2 cut(s)	466, 576
Bst4CI	ACNGT	2 cut(s)	89, 155
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	2 cut(s)	466, 576
BstC8I	GCNNGC	2 cut(s)	168, 595
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	6 cut(s)	47, 112, 229, 259, 303, 364
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 250, 472, 560
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	175, 187, 541
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	6 cut(s)	47, 112, 229, 259, 303, 364
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	168, 595
Cfr13I	GGNCC	2 cut(s)	172, 293
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	3 cut(s)	455, 569, 584
Csp6I	GTAC	2 cut(s)	22, 183
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	3 cut(s)	136, 377, 487
CviJI	RGCY	7 cut(s)	17, 146, 226, 425, 491, 529, 546
CviKI_1	RGCY	7 cut(s)	17, 146, 226, 425, 491, 529, 546
CviQI	GTAC	2 cut(s)	22, 183
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	172, 293
FaeI	CATG	3 cut(s)	139, 380, 490
FaiI	YATR	8 cut(s)	137, 158, 237, 270, 291, 378, 463, 488
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	3 cut(s)	135, 376, 486
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	164, 201, 358, 555
FokI	GGATG	6 cut(s)	34, 119, 216, 246, 290, 351
Fsp4HI	GCNGC	4 cut(s)	164, 201, 358, 555
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	4 cut(s)	164, 201, 358, 555
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	3 cut(s)	60, 368, 470
HgaI	GACGC	3 cut(s)	455, 569, 584
Hin1I	GRCGYC	2 cut(s)	466, 576
Hin1II	CATG	3 cut(s)	139, 380, 490
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	100, 139
HpaII	CCGG	3 cut(s)	60, 368, 470
Hpy166II	GTNNAC	3 cut(s)	22, 76, 85
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	4 cut(s)	104, 220, 391, 470
Hpy8I	GTNNAC	3 cut(s)	22, 76, 85
HpyAV	CCTTC	3 cut(s)	273, 371, 401
HpyCH4III	ACNGT	2 cut(s)	89, 155
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	124, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 250, 472, 560
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	466, 576
Hsp92II	CATG	3 cut(s)	139, 380, 490
Kpn2I	TCCGGA	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	3 cut(s)	120, 231, 472
LpnPI	CCDG	8 cut(s)	51, 73, 189, 350, 381, 447, 483, 564
Lsp1109I	GCAGC	3 cut(s)	175, 187, 541
LweI	GCATC	2 cut(s)	97, 268
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	2 cut(s)	47, 406
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	5 cut(s)	42, 119, 194, 399, 437
MnlI	CCTC	5 cut(s)	79, 361, 426, 557, 565
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	2 cut(s)	498, 588
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	3 cut(s)	60, 368, 470
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	121, 250, 472, 560
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	139, 380, 490
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	100, 139
PkrI	GCNGC	4 cut(s)	165, 202, 359, 556
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	172, 293
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	23, 184
RsaNI	GTAC	2 cut(s)	22, 183
RseI	CAYNNNNRTG	1 cut(s)	491
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	498, 588
SatI	GCNGC	4 cut(s)	164, 201, 358, 555
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	172, 293
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	6 cut(s)	71, 148, 184, 228, 353, 608
SfaNI	GCATC	2 cut(s)	97, 268
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	172, 293
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	254, 389
SmoI	CTYRAG	2 cut(s)	254, 389
Sse9I	AATT	5 cut(s)	42, 119, 194, 399, 437
SsiI	CCGC	4 cut(s)	170, 175, 358, 557
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	89, 155
TaiI	ACGT	1 cut(s)	184
TasI	AATT	5 cut(s)	42, 119, 194, 399, 437
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	100, 139
Tru1I	TTAA	2 cut(s)	498, 588
Tru9I	TTAA	2 cut(s)	498, 588
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	3 cut(s)	163, 200, 554
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	5 cut(s)	36, 152, 173, 353, 365
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	172, 293
XapI	RAATTY	2 cut(s)	194, 437
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.