Rh3CG227400

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001157
Physical Location & Seq
Reverse (-)
21380018 .. 21380371
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG227400.1

Sequence Viewer

Length: 354 bp
ATGAAATCAAAGTTACGTAAGCAATTTTTGCCGGCTGATTATGCAATGGAGTTATATGAAAGATTTCATTCCTTGAAGCAGCTGAGCGCATCCCTGTTTGATAACCTCTCAATTCAGGTGGGACTAGATGAGACCAATGAGCAGCTGACCTCTCATTATCTTAGTGGATTACACCCATCCATTAGAGATGAAATGGGGGTTGTACAGCTGTACAACTTGGAAGAAGCTCGGCAAAATGCCTTAATGGCAGAAAAAAGGCTACAACGTCATGGAGTTAGGAGATCTAACACTGGACGTTTTGATGGTGCTTGGACAAAGAATTCAACTACAGTTCGTGGGGTGCGTAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

117

Amino Acids

13.49

Weight (kDa)

9.39

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 2 cut(s) 204, 212
AgsI TTSAA 2 cut(s) 76, 324
AluBI AGCT 4 cut(s) 82, 145, 208, 227
AluI AGCT 4 cut(s) 82, 145, 208, 227
Alw26I GTCTC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 79, 142
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 91, 154
BccI CCATC 2 cut(s) 184, 296
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 245
BglII AGATCT 1 cut(s) 281
BisI GCNGC 2 cut(s) 80, 143
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 2 cut(s) 81, 144
BmsI GCATC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 51
BseGI GGATG 2 cut(s) 89, 176
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 2 cut(s) 91, 154
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 125
Bsp1407I TGTACA 2 cut(s) 202, 210
Bsp143I GATC 1 cut(s) 281
Bsp1720I GCTNAGC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 202, 210
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 331
BstAPI GCANNNNNTGC 1 cut(s) 28
BstAUI TGTACA 2 cut(s) 202, 210
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 83, 161
BstF5I GGATG 2 cut(s) 89, 176
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 3 cut(s) 28, 41, 245
BstSFI CTRYAG 1 cut(s) 327
BstSNI TACGTA 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 91, 154
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtsCI GGATG 2 cut(s) 89, 176
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 31
Csp6I GTAC 2 cut(s) 203, 211
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 35, 82, 145, 208, 227, 259
CviKI_1 RGCY 6 cut(s) 35, 82, 145, 208, 227, 259
CviQI GTAC 2 cut(s) 203, 211
DdeI CTNAG 2 cut(s) 83, 161
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 319
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 42, 55, 57, 270
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 80, 143
FokI GGATG 2 cut(s) 76, 163
Fsp4HI GCNGC 2 cut(s) 80, 143
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 80, 143
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HpaII CCGG 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 3 cut(s) 16, 265, 295
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 41, 245
HpyF3I CTNAG 2 cut(s) 83, 161
HpySE526I ACGT 3 cut(s) 16, 265, 295
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 87
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 4 cut(s) 45, 101, 107, 276
Lsp1109I GCAGC 2 cut(s) 91, 154
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 16, 265, 295
MaeIII GTNAC 2 cut(s) 12, 347
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 281
MluCI AATT 3 cut(s) 23, 111, 319
MnlI CCTC 2 cut(s) 116, 160
MroNI GCCGGC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 3 cut(s) 82, 145, 208
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 28, 41, 245
NaeI GCCGGC 1 cut(s) 33
NdeII GATC 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 81, 144
Ppu21I YACGTR 1 cut(s) 17
PsuI RGATCY 1 cut(s) 281
PvuII CAGCTG 3 cut(s) 82, 145, 208
RsaI GTAC 2 cut(s) 204, 212
RsaNI GTAC 2 cut(s) 203, 211
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 80, 143
Sau3AI GATC 1 cut(s) 281
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 327
SnaBI TACGTA 1 cut(s) 17
Sse9I AATT 3 cut(s) 23, 111, 319
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 3 cut(s) 19, 268, 298
TasI AATT 3 cut(s) 23, 111, 319
TatI WGTACW 2 cut(s) 202, 210
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 2 cut(s) 79, 142
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 4 cut(s) 17, 56, 72, 204
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.