Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

1784009 .. 1784626

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G001250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCCCCATTTCAGGCTGTCTATGGCATACCCCCACCGTCGGTGTCGATGTATACTCCGGGCTCTACGGCGGTCCATGCTGTGGATCGTACCCTGCAAGATCGTAATGCTCTACTTGACATGCTGAAGACTCACATGTCTCAAGCCCAAAACCGAATGAAACAGCAAGCTGATTCTCACCGCACCGAACGAGAGTTCCAAGTTGGTGATTGGGTTTTTCTGAAATTGCATCCCTATAGACAGCAATCCTTGGTGAAACGCCCCTCTCATAAACTGTCTCCCCGTTTTTACGGCCCTTTCCAAGTGCAGGCTAAGGTCGGCAAGGTCGCATACCGCTTGGCCCTCCCCCCTCATTCCAAGATCCACCCTGTCTTTCACGTGTCTCTCCTAAAGAAACGTATGGGCGATGGTATTCCTCTGTCATCCACTCTTCCTCACTTTGACAGTCACGGGGAACTGGTTTGGCAACCCTTGAAGGTCCTAGACATGGCTGTATGCAAAAAGAAGAAGCGCTCCTTCACCAAGTGGCTCATCCAATGGGTAGGTCTACCGGTGGAAGATGCGACTTGGGAAGAGGCACACATGATAAAGGCTCGTTTCCCTTCCTTTTGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.52

Weight (kDa)

10.0

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	1.4e-25	Tf2-1-like, SH3 domain
Chromo	PF00385	159 - 201	5.8e-06	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	2 cut(s)	53, 547
AciI	CCGC	3 cut(s)	71, 181, 334
AclWI	GGATC	2 cut(s)	93, 355
AcuI	CTGAAG	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	91
AfeI	AGCGCT	1 cut(s)	512
AfiI	CCNNNNNNNGG	5 cut(s)	13, 40, 82, 307, 487
AflIII	ACRYGT	2 cut(s)	135, 378
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	1 cut(s)	475
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	3 cut(s)	144, 282, 387
AlwI	GGATC	2 cut(s)	93, 355
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	2 cut(s)	292, 339
AsiGI	ACCGGT	1 cut(s)	550
AspLEI	GCGC	2 cut(s)	513, 614
AspS9I	GGNCC	4 cut(s)	73, 293, 340, 478
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	170, 218, 265, 511
AvaII	GGWCC	2 cut(s)	73, 478
BanII	GRGCYC	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	134
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	84, 307
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	144, 282, 387
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	73, 478
BmgT120I	GGNCC	4 cut(s)	73, 293, 340, 478
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	238, 550
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 40, 82, 307, 487
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	3 cut(s)	229, 422, 531
BseLI	CCNNNNNNNGG	5 cut(s)	13, 40, 82, 307, 487
BseNI	ACTGG	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	294, 341
BshTI	ACCGGT	1 cut(s)	550
BsiSI	CCGG	2 cut(s)	59, 551
BslI	CCNNNNNNNGG	5 cut(s)	13, 40, 82, 307, 487
BsmAI	GTCTC	3 cut(s)	144, 282, 387
BsnI	GGCC	2 cut(s)	294, 341
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	85, 100, 360
BspACI	CCGC	3 cut(s)	71, 181, 334
BspANI	GGCC	2 cut(s)	294, 341
BspPI	GGATC	2 cut(s)	93, 355
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	3 cut(s)	85, 100, 360
BssNAI	GTATAC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	39, 276, 446
Bst6I	CTCTTC	2 cut(s)	435, 567
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	168, 309
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	229, 422, 531
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	513, 614
BstKTI	GATC	3 cut(s)	88, 103, 363
BstMAI	GTCTC	3 cut(s)	144, 282, 387
BstMBI	GATC	3 cut(s)	85, 100, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	124, 139
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BstZ17I	GTATAC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	294, 341
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	229, 422, 531
Cac8I	GCNNGC	2 cut(s)	168, 309
CfoI	GCGC	2 cut(s)	513, 614
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	73, 293, 340, 478
Csp6I	GTAC	1 cut(s)	90
CspAI	ACCGGT	1 cut(s)	550
CviAII	CATG	5 cut(s)	77, 121, 136, 487, 583
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	87, 102, 362
DpnII	GATC	3 cut(s)	85, 100, 360
DraIII	CACNNNGTG	1 cut(s)	525
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	435, 567
EarI	CTCTTC	2 cut(s)	435, 567
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	73, 478
Eco47III	AGCGCT	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	146
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	80, 124, 139, 490, 586
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	5 cut(s)	76, 120, 135, 486, 582
FblI	GTMKAC	2 cut(s)	53, 547
FokI	GGATG	3 cut(s)	216, 409, 518
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	2 cut(s)	512, 613
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	294, 341
HapII	CCGG	2 cut(s)	59, 551
HhaI	GCGC	2 cut(s)	513, 614
Hin1II	CATG	5 cut(s)	80, 124, 139, 490, 586
Hin6I	GCGC	2 cut(s)	511, 612
HinP1I	GCGC	2 cut(s)	511, 612
HinfI	GANTC	2 cut(s)	130, 173
HpaII	CCGG	2 cut(s)	59, 551
HphI	GGTGA	4 cut(s)	170, 218, 265, 511
Hpy166II	GTNNAC	2 cut(s)	54, 548
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	54, 548
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	469, 526, 612
HpyCH4III	ACNGT	3 cut(s)	39, 276, 446
HpyCH4IV	ACGT	2 cut(s)	378, 397
HpyCH4V	TGCA	4 cut(s)	97, 229, 307, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	378, 397
Hsp92II	CATG	5 cut(s)	80, 124, 139, 490, 586
HspAI	GCGC	2 cut(s)	511, 612
Kzo9I	GATC	3 cut(s)	85, 100, 360
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	6 cut(s)	72, 107, 293, 381, 443, 564
LweI	GCATC	2 cut(s)	238, 550
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	378, 397
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	87, 102, 362
MboI	GATC	3 cut(s)	85, 100, 360
MboII	GAAGA	5 cut(s)	139, 422, 517, 569, 584
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	274, 353, 360, 426, 444, 568
MspI	CCGG	2 cut(s)	59, 551
MspR9I	CCNGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	85, 100, 360
NlaIII	CATG	5 cut(s)	80, 124, 139, 490, 586
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	2 cut(s)	124, 139
PciI	ACATGT	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	82
PinAI	ACCGGT	1 cut(s)	550
PleI	GAGTC	1 cut(s)	124
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	478
PscI	ACATGT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	478
PspCI	CACGTG	1 cut(s)	379
PspPI	GGNCC	4 cut(s)	73, 293, 340, 478
PspPPI	RGGWCCY	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	85, 100, 360
Sau96I	GGNCC	4 cut(s)	73, 293, 340, 478
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	172, 318, 327, 381, 400, 480, 547
SfaNI	GCATC	2 cut(s)	238, 550
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	73, 478
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	3 cut(s)	71, 181, 334
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	39, 276, 446
TaiI	ACGT	2 cut(s)	381, 400
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	73, 478
XceI	RCATGY	2 cut(s)	124, 139
XmiI	GTMKAC	2 cut(s)	53, 547
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.