Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

64092950 .. 64094737

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCAATCTTGGTCGTTGTTGATCGCCTCTCCAAATCCGGTCACTTCCTTCCAATCACCCACCTATTTATTGCCACCGAAATTGCCGAATTGTTTGTACAAGAGGTCTTTCGCCTTCACGGCATGCCCCAATCAATCACCAAGGACGGGGACCCCATCTTCATCGCAAGTTCGGGAAGCGTTCTTCAAGCCGCAGGGCACAAAGTTATGTCGAAGTTCGGCGTACCATCCACAATCCGACCGGCAAATGGAGGCGGTCAACCGGTGCCTAGAACACTATCCGCGATGCTTCGTTGCGTACAAACCCAGCTCTTGGGCATCTCTTCTTCATCGGGTCGAGTGGTGGTATAATACCACCTTCCACTCCGCCATCAACATGACGCCGTATCAAGCCGTCTATGGCAAGCCACCGCCGGCTGTCTCTCTGTATGTCCCGTGCTCCACCGCAAGTGCACGCTCGTGGATATTTCACTATAGAATCGCGACGAGATCCTTCGTCCGCTCCGATCCAACATGGCCCTCGCACAAAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

178

Amino Acids

20.36

Weight (kDa)

9.82

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	501
AccII	CGCG	2 cut(s)	283, 482
AciI	CCGC	7 cut(s)	191, 254, 281, 366, 410, 444, 499
AclWI	GGATC	2 cut(s)	483, 500
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	3 cut(s)	98, 224, 299
AfiI	CCNNNNNNNGG	3 cut(s)	146, 247, 312
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	457
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
Alw21I	GWGCWC	2 cut(s)	440, 454
Alw26I	GTCTC	1 cut(s)	424
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	483, 500
AoxI	GGCC	1 cut(s)	515
ApaLI	GTGCAC	1 cut(s)	450
AsiGI	ACCGGT	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	150, 516
AsuHPI	GGTGA	2 cut(s)	48, 129
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	2 cut(s)	200, 454
BanI	GGYRCC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	457
Bbv12I	GWGCWC	2 cut(s)	440, 454
BccI	CCATC	3 cut(s)	163, 234, 377
BceAI	ACGGC	3 cut(s)	135, 367, 377
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	150, 516
BmiI	GGNNCC	3 cut(s)	151, 152, 266
BmsI	GCATC	2 cut(s)	275, 326
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	140
BsaWI	WCCGGW	2 cut(s)	37, 261
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 247, 312
Bse118I	RCCGGY	3 cut(s)	240, 261, 412
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	146, 247, 312
BseSI	GKGCMC	2 cut(s)	200, 454
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	283, 482
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	440, 454
BsiSI	CCGG	4 cut(s)	38, 241, 262, 413
BslFI	GGGAC	2 cut(s)	163, 416
BslI	CCNNNNNNNGG	3 cut(s)	146, 247, 312
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	163, 416
BsnI	GGCC	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	200, 440, 454
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	21, 488, 505
Bsp68I	TCGCGA	1 cut(s)	482
BspACI	CCGC	7 cut(s)	191, 254, 281, 366, 410, 444, 499
BspANI	GGCC	1 cut(s)	517
BspFNI	CGCG	2 cut(s)	283, 482
BspLI	GGNNCC	3 cut(s)	151, 152, 266
BspPI	GGATC	2 cut(s)	483, 500
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	240, 261, 412
BsrGI	TGTACA	1 cut(s)	96
BssAI	RCCGGY	3 cut(s)	240, 261, 412
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	21, 488, 505
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	124, 404, 414, 454
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	283, 482
BstKTI	GATC	3 cut(s)	24, 491, 508
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	21, 488, 505
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	2 cut(s)	200, 454
BstUI	CGCG	2 cut(s)	283, 482
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	517
BtgZI	GCGATG	2 cut(s)	147, 298
BtsCI	GGATG	1 cut(s)	226
BtuMI	TCGCGA	1 cut(s)	482
Cac8I	GCNNGC	4 cut(s)	124, 404, 414, 454
Cfr10I	RCCGGY	3 cut(s)	240, 261, 412
Cfr13I	GGNCC	2 cut(s)	150, 516
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	97, 223, 298
CspAI	ACCGGT	1 cut(s)	261
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	3 cut(s)	123, 376, 513
CviJI	RGCY	6 cut(s)	190, 309, 392, 406, 416, 517
CviKI_1	RGCY	6 cut(s)	190, 309, 392, 406, 416, 517
CviQI	GTAC	3 cut(s)	97, 223, 298
DpnI	GATC	3 cut(s)	23, 490, 507
DpnII	GATC	3 cut(s)	21, 488, 505
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	3 cut(s)	126, 379, 516
FaiI	YATR	9 cut(s)	124, 208, 348, 377, 399, 429, 474, 514, 535
FaqI	GGGAC	2 cut(s)	163, 416
FatI	CATG	3 cut(s)	122, 375, 512
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	4 cut(s)	38, 241, 262, 413
HgaI	GACGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	126, 379, 516
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	4 cut(s)	38, 241, 262, 413
HphI	GGTGA	2 cut(s)	48, 129
Hpy166II	GTNNAC	2 cut(s)	259, 452
Hpy188I	TCNGA	2 cut(s)	238, 505
Hpy188III	TCNNGA	2 cut(s)	173, 481
Hpy8I	GTNNAC	2 cut(s)	259, 452
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	58, 124, 367, 502
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4V	TGCA	2 cut(s)	4, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	126, 379, 516
KflI	GGGWCCC	1 cut(s)	150
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	21, 488, 505
LmnI	GCTCC	2 cut(s)	443, 506
LpnPI	CCDG	6 cut(s)	51, 179, 254, 275, 319, 426
LweI	GCATC	2 cut(s)	275, 326
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	23, 490, 507
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	3 cut(s)	21, 488, 505
MboII	GAAGA	4 cut(s)	150, 175, 314, 317
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	3 cut(s)	200, 440, 454
MluCI	AATT	2 cut(s)	80, 88
MmeI	TCCRAC	2 cut(s)	261, 533
MnlI	CCTC	4 cut(s)	37, 96, 244, 529
MroNI	GCCGGC	1 cut(s)	412
MslI	CAYNNNNRTG	2 cut(s)	374, 457
MspI	CCGG	4 cut(s)	38, 241, 262, 413
MvnI	CGCG	2 cut(s)	283, 482
MwoI	GCNNNNNNNGC	1 cut(s)	119
NaeI	GCCGGC	1 cut(s)	414
NdeII	GATC	3 cut(s)	21, 488, 505
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	126, 379, 516
NlaIV	GGNNCC	3 cut(s)	151, 152, 266
NmuCI	GTSAC	1 cut(s)	40
NruI	TCGCGA	1 cut(s)	482
NspI	RCATGY	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	312
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	151, 152, 266
PspPI	GGNCC	2 cut(s)	150, 516
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	482
RsaI	GTAC	3 cut(s)	98, 224, 299
RsaNI	GTAC	3 cut(s)	97, 223, 298
RseI	CAYNNNNRTG	2 cut(s)	374, 457
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	3 cut(s)	21, 488, 505
Sau96I	GGNCC	2 cut(s)	150, 516
SduI	GDGCHC	3 cut(s)	200, 440, 454
SetI	ASST	4 cut(s)	65, 107, 311, 359
SfaNI	GCATC	2 cut(s)	275, 326
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	2 cut(s)	374, 457
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	80, 88
SsiI	CCGC	7 cut(s)	191, 254, 281, 366, 410, 444, 499
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	532
TaqI	TCGA	2 cut(s)	211, 336
TasI	AATT	2 cut(s)	80, 88
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	150, 317
Van91I	CCANNNNNTGG	1 cut(s)	312
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	1 cut(s)	126
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.