Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

45084512 .. 45085129

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACTCATTTCCAAGCAGTTTATGGGTCACCCCCACCAACGATTACAAGGTACCTTCCGGGCACAACCATTGTACACTCTGTGGATCAAGCCCTACAACACAGGGACGAGTTGCTTGATCTATTGAAACATCACATGGAGGTTGCTCATAATAGAATGAAACAACAGGCTGACAAGGCTAGAACAGAGAGAAGTTTTGAAATTGGAGAGTGGGTCTACCTTAAACTGCATCCTTACAGACAGAAATCACTCATCAGAAGACCATCTCATAAATTGGCTGCTCGATTTTATGGTCCCTTCCAGATCGCAGCTAAGATTGGCCCAGTGGCTTACAAATTGGCCTTGCCTGCTCATTCCAAACTACACCTAACCTTTCATGTATCACTCTTGAAGAGGAAATTGGGTAACCTTGTTCCTAGCTCCCCTACACTTCCACCATTCGACGACAATGGTTTACTCACTTGGACTCCGGAAAAAGTACTTGATATGGCGGTCGAACAGAAGAAGAAGGGATCGGTGACTAAATGGTTGGTGAAATGGACAGGGGTGCCTGCTGAAGACGCAACGTGGGAAGTGGCCCATGCCTTTATGAATCGGTTTCCAAACTTTAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.46

Weight (kDa)

9.92

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	2.9e-22	Tf2-1-like, SH3 domain
Chromo	PF00385	155 - 193	7.1e-07	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	2 cut(s)	51, 547
AccI	GTMKAC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	93, 520
AcuI	CTGAAG	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	3 cut(s)	53, 75, 480
AgsI	TTSAA	3 cut(s)	127, 200, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	2 cut(s)	311, 420
AluI	AGCT	2 cut(s)	311, 420
AlwI	GGATC	2 cut(s)	93, 520
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	319, 339, 576
ApeKI	GCWGC	2 cut(s)	278, 308
Asp718I	GGTACC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	293, 320, 577
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	21, 529, 544
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	65
BanI	GGYRCC	2 cut(s)	51, 547
BbsI	GAAGAC	2 cut(s)	265, 564
BbvI	GCAGC	2 cut(s)	265, 320
BccI	CCATC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	2 cut(s)	180, 417
BisI	GCNGC	2 cut(s)	279, 309
BlsI	GCNGC	2 cut(s)	280, 310
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	293, 320, 577
BmiI	GGNNCC	3 cut(s)	53, 295, 549
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	2 cut(s)	265, 564
BpuMI	CCSGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 451, 481
Bse1I	ACTGG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	265, 320
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	321, 341, 578
BshNI	GGYRCC	2 cut(s)	51, 547
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	59, 470
BslFI	GGGAC	2 cut(s)	119, 279
BsmFI	GGGAC	2 cut(s)	119, 279
BsnI	GGCC	3 cut(s)	321, 341, 578
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	85, 118, 303, 512
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	3 cut(s)	321, 341, 578
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	53, 295, 549
BspPI	GGATC	2 cut(s)	93, 520
BspT107I	GGYRCC	2 cut(s)	51, 547
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	323
BssMI	GATC	4 cut(s)	85, 118, 303, 512
Bst6I	CTCTTC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	348, 552
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	2 cut(s)	27, 404
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	88, 121, 306, 515
BstMBI	GATC	4 cut(s)	85, 118, 303, 512
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 347, 560
BstPI	GGTNACC	2 cut(s)	27, 404
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	265, 320
BstV2I	GAAGAC	2 cut(s)	265, 564
BsuRI	GGCC	3 cut(s)	321, 341, 578
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	348, 552
Cfr13I	GGNCC	3 cut(s)	293, 320, 577
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	52, 74, 479
CviAII	CATG	3 cut(s)	136, 377, 581
CviQI	GTAC	3 cut(s)	52, 74, 479
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	87, 120, 305, 514
DpnII	GATC	4 cut(s)	85, 118, 303, 512
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	576
Eco91I	GGTNACC	2 cut(s)	27, 404
EcoO65I	GGTNACC	2 cut(s)	27, 404
FaeI	CATG	3 cut(s)	139, 380, 584
FaiI	YATR	9 cut(s)	24, 137, 150, 270, 291, 378, 488, 582, 590
FaqI	GGGAC	2 cut(s)	119, 279
FatI	CATG	3 cut(s)	135, 376, 580
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	279, 309
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	279, 309
FspBI	CTAG	2 cut(s)	180, 417
GluI	GCNGC	2 cut(s)	279, 309
HaeIII	GGCC	3 cut(s)	321, 341, 578
HapII	CCGG	2 cut(s)	59, 470
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	139, 380, 584
HinfI	GANTC	3 cut(s)	4, 466, 592
HpaII	CCGG	2 cut(s)	59, 470
HphI	GGTGA	3 cut(s)	21, 529, 544
Hpy166II	GTNNAC	3 cut(s)	76, 217, 455
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	3 cut(s)	301, 388, 470
Hpy8I	GTNNAC	3 cut(s)	76, 217, 455
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	65, 307, 502
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 347, 560
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	3 cut(s)	139, 380, 584
Kpn2I	TCCGGA	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	85, 118, 303, 512
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	9 cut(s)	72, 88, 152, 314, 336, 360, 483, 528, 564
Lsp1109I	GCAGC	2 cut(s)	265, 320
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	180, 417
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	27, 404, 517
MalI	GATC	4 cut(s)	87, 120, 305, 514
MboI	GATC	4 cut(s)	85, 118, 303, 512
MboII	GAAGA	5 cut(s)	270, 403, 514, 517, 569
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	201, 272, 335, 398
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	2 cut(s)	133, 387
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	2 cut(s)	222, 609
MspI	CCGG	2 cut(s)	59, 470
MspR9I	CCNGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	176, 347, 560
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	85, 118, 303, 512
NlaIII	CATG	3 cut(s)	139, 380, 584
NlaIV	GGNNCC	3 cut(s)	53, 295, 549
NmuCI	GTSAC	2 cut(s)	27, 517
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	280, 310
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PspEI	GGTNACC	2 cut(s)	27, 404
PspN4I	GGNNCC	3 cut(s)	53, 295, 549
PspPI	GGNCC	3 cut(s)	293, 320, 577
RsaI	GTAC	3 cut(s)	53, 75, 480
RsaNI	GTAC	3 cut(s)	52, 74, 479
SaqAI	TTAA	2 cut(s)	222, 609
SatI	GCNGC	2 cut(s)	279, 309
Sau3AI	GATC	4 cut(s)	85, 118, 303, 512
Sau96I	GGNCC	3 cut(s)	293, 320, 577
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	201, 272, 335, 398
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	180, 417
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	3 cut(s)	283, 441, 495
TasI	AATT	4 cut(s)	201, 272, 335, 398
TatI	WGTACW	2 cut(s)	73, 478
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	2 cut(s)	222, 609
Tru9I	TTAA	2 cut(s)	222, 609
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	27, 517
TseI	GCWGC	2 cut(s)	278, 308
Tsp45I	GTSAC	2 cut(s)	27, 517
TspDTI	ATGAA	3 cut(s)	173, 365, 605
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	2 cut(s)	180, 417
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.